Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi188g00049 ATGAGTGACAAGGAAAAGTTTGAGCTTGATAGAAACGAGGATCCTATGAGTTATTCTACTGGTATGCCCTCGGATTGGAGATTTGGGGGTGCCAATCTTGCAAATTCATCTGTGGGATTGGTTGCCATGGGAAGTTCTATGAATGTCAACAGAGGGGATCTAATTGGTTCTTCTTCATGTTCCTCTGCCTCAATGGTGGATTCATTTGGTCCAAACTTCTGGGACCATCCAACCAATTCCCAAAACTTGGGATTTTGTGACATTAATGTCCACAACAATGGGAGCTCTTCAAACACAACTGGAATCAGAAAAGATGGCTTTGGCTTTGGAAGAGCTGGTCAGGATCATGGATCACTTGAAATGGGTTGGAACCCTTCTAATTCTATGTTGAAAGGGGATGGTTTTTTACCAAATGGACCAGGGATATTTCCCCAGAGTTTATCTCAGTTTCCAACTGATTCTGGATTTATTGAGCGGGCTGCAAGATTCTCATGCTTCAGTGGAGGGAATTTTGGTGATATGGTGAACTCATATGAGATTCCTCAATCCATGGGGATGTATGCTGGGACAATACATGGAACAAGAGATGCTTTTGCAGGCCATGGATTAAAATCAGCAACTGGAGGACAATCTCAAGAAAGTGATCTCAATGTAGTTGAGGCTACAAAATCTGTGTCTCCATCTGTTGAGCATTTGGCTACTAAAGGAAGCCCTCTCAAGAATGATAAAAGAAGTGAAAACCGAGTTATATCTCAAGATGAAGGGAAGCAAACCCTTGTTAGGCCTGCTAATGATTCTGATAGAGCTGAATCTAGTGATGATGATGGTGGTGGCGGCCAGGATGATTCCCCAATGTTGGAGGGTACTAGTGGGGAGCCTTCTATTAAAGGACTAAACTCAAAGAAAAGGAAAAGAAGTGGACAGGATGCTGATAATGATAAAGCCAATGGAGCTCCAGAACTACACAGTGAAGGTGCAAAGGACAACTCTGAGAGTCAACAGAAGGTAGACCAACAACCAACTTCAACAGCCAAGGCTTCTGGGAAGAATGCCAAACAAGGGTCTCAAGCTTCTGATCAACCTAAGGAGGAATACATACATGTTAGGGCTCGGCGGGGTCAAGCAACAAATAGTCACAGCCTTGCAGAGAGAGTTAGGAGGGAAAAGATAAGTGAGAGGATGAAGTTTCTTCAAGACCTTGTACCTGGATGCAGCAAGGTCACTGGCAAAGCAGTGATGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAGTTTTTATCTATGAAACTTGCAACAGTAAATCCACGGCTGGATTTTAATATTGAAGGACTTCTTGCTAAAGATATTCTTCACCAACGGCCTGGTCCTTCATCTGCACTAGGGTTTCCTCTAGAAATGTCTATGGCTTTTCCTCCATTACATCCTTCTCAACCAGGGATGATTCAGCCAATTATTCCTAACATGGCAAACTCCTCCGATATCCTTCGAAGAACTGTTCATCCACAGTTAGCACCCTTGAGTGGAGGATTCAAGGAGCCAAATCAGCTGCCTGATGTGTGGGAGGATGAGCTTCACAATGTTGTACAGATGAGCTTTGCAACAACTGCTCCCCTGAGTAGCCAAGATGTGGATGGTACTGTGCCAGCAAGTCAGATGAAAGTTGAACTTTGA 1686 0.4371 MSDKEKFELDRNEDPMSYSTGMPSDWRFGGANLANSSVGLVAMGSSMNVNRGDLIGSSSCSSASMVDSFGPNFWDHPTNSQNLGFCDINVHNNGSSSNTTGIRKDGFGFGRAGQDHGSLEMGWNPSNSMLKGDGFLPNGPGIFPQSLSQFPTDSGFIERAARFSCFSGGNFGDMVNSYEIPQSMGMYAGTIHGTRDAFAGHGLKSATGGQSQESDLNVVEATKSVSPSVEHLATKGSPLKNDKRSENRVISQDEGKQTLVRPANDSDRAESSDDDGGGGQDDSPMLEGTSGEPSIKGLNSKKRKRSGQDADNDKANGAPELHSEGAKDNSESQQKVDQQPTSTAKASGKNAKQGSQASDQPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEGLLAKDILHQRPGPSSALGFPLEMSMAFPPLHPSQPGMIQPIIPNMANSSDILRRTVHPQLAPLSGGFKEPNQLPDVWEDELHNVVQMSFATTAPLSSQDVDGTVPASQMKVEL 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi188g00049 561 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 257 479 IPR024097 GO:0006355
Sebi188g00049 561 MobiDBLite consensus disorder prediction 236 251 - -
Sebi188g00049 561 MobiDBLite consensus disorder prediction 260 275 - -
Sebi188g00049 561 MobiDBLite consensus disorder prediction 1 22 - -
Sebi188g00049 561 SMART finulus 380 430 IPR011598 GO:0046983
Sebi188g00049 561 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 374 424 IPR011598 GO:0046983
Sebi188g00049 561 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 372 443 IPR036638 GO:0046983
Sebi188g00049 561 MobiDBLite consensus disorder prediction 297 331 - -
Sebi188g00049 561 CDD bHLH_AtBPE_like 364 449 - -
Sebi188g00049 561 Gene3D - 371 444 IPR036638 GO:0046983
Sebi188g00049 561 MobiDBLite consensus disorder prediction 332 360 - -
Sebi188g00049 561 MobiDBLite consensus disorder prediction 223 362 - -
Sebi188g00049 561 FunFam Basic helix-loop-helix transcription factor 371 443 - -
Sebi188g00049 561 Pfam Helix-loop-helix DNA-binding domain 377 425 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi188g00049 Sebi-Chr188 753199 755959 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi188g00049 56 537 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 46.531 6.92e-119 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi188g00049 HLH 7.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi188g00049 - - gmx:100797720 925.235