Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi188g00030 ATGGCAAAAGATACTTCTGGTTCTGATTCCCATCATAGACGTCATGGCCTTTTAAAAGATCAAGTTCATTTGGTTAAAAGGAGAGACTCTGATCGCTATGAGATTGCTCCAATCCAAGATCAACTATCGTTTGAGAAGGGCTTTTTTATAGTTATTCGTGCATGCCAATTGTTAGCCCAAAAGAATGATGGAATAATACTGGTAGGGGTGGCTGGTCCTTCAGGAGCAGGGAAGACTGTATTTACCGAAAAGATACTCAGCTTCATGCCCAGCATTGCTGTCATTTCAATGGATAACTACAATGATTCTAGTCGAATTGTTGATGGAAATTTTGATGATCCACGCTTAACAGACTATGATACATTGCTCCAGAATCTACATGATTTAAAGGAAGGAAAGCCCGCCCAGGTTCCTATATATGATTTCAAGTCCAGTTCACGCACAGGATACAGGACAGTAGAAGCCCCAAGTTCCCGTATTGTGATTATAGAGGGCATCTATGCCTTGAGTGAGAAATTGCGAACTCTTCTGGACCTTCGAGTTTCTGTTACAGGGGGAGTTCACTTTGACCTTGTAAAGAGAGTTATACGTGACATACAACGTGCTGGTCAAGAACCTGAAGAAATTATTCACCAAATATCTGAGACGGTATATCCAATGTACAAGGCTTTTATTGAGCCAGATCTCCAGACAGCACATATAAAAATCATCAACAAATTCAATCCATTTACTGGATTCCAGTGCCCTACTTACATATTAAAGTCAGCGAGGAATGTTACAGTGGATCAAATTAAAGCTGTTCTCTCTGAAGATTTTAAGGAAACAACAGAGCAAACTTATGACATATATCTTCTACCACCTGGTGAAGATCTAGAAACTTGCCAATCATATTTACGGATGCGAAATAAGGATGGAAAATACAGTCTCATGTTTGAGGAATGGGTGACAGATAATCCATTTGTTATATCACCAAGAATTACTTTTGAGGTCAGTGTGCGCCTTCTTGGTGGACTTATGGCCTTGGGATACACAATAGCTACCATCCTTAAGAGAAACAGCCATGTCTATTCTGATGAAAGGGTTTGTGTGAAACTAGATTGGCTTGAGCAACTTAATCGACATTATGTTCAGGTACAAGGAAGAGATCGTTTAGTAGTAAAATATGTAGGAGAGCAGCTGGGTCTCGAAGGTTCCTACATTCCTCGTACCTACATTGAGCAAATTCAACTTGAAAAGCTTGTGAATGAGGTTATGGCCCTACCAGATGATTTGAAGACAAAGCTCAGCCTAGATGAAGATTTGGTGTCAAGCCCCAAAGAAGCACTTTCCAGAGCCTCTGCTGACAGGGTTGCCATGAGAAATAAATATCTGAGGAGTGGAATGTCACAATCGTATACAAATCAAAGGGACAAAAATCTAGCCAAAGTCACGGGATATGTTGCCAAGAATAGAGGGTTTGGTGAAAGAAATTCAGATTCTTCCACAGCACCAGTAAATCAGGGAGCCATTAGTCATCTTTCGGATCAGATTTCTGCCCTCAATGATAGAATGGATGAATTTACAAATCGTATTGAAGAGCTAAACTCCAAGTTAACCATCAAGAAAAATTCTCCAAGCCAACAAAATATGTTAGTTCAAGCCGAGGCCTGCAATGGTTCTGCTCCTACCTCTTATTTCATCACTAGTTTGGGCAATGGTTCTCTGACTGGATCTAAGTTGACAAATTCCTCATCTTCATCACAATTGGCTAAAGATTCTCCTTTAATGGATGAGATATCAAGCATTGCGCGTAGTCAGCGTCAGATCATGCATCAATTGGACAATCTCAATAATCTTCTCCGGGGGAGCTTGGGGGAGAAGTCTCACCAAACAAGAACCAACAGGAAAAGCATAGCTGCAGATTCAAATTCCACCGGAGCTCGTGTTATGGTAGCAGTGACAATTGGTTGTTTGGGGATCTTCCTGATGAAAGATTCTGGAGGCAGTGAGAGAGAGAGGGTGATGGCCACTTGA 2013 0.4113 MAKDTSGSDSHHRRHGLLKDQVHLVKRRDSDRYEIAPIQDQLSFEKGFFIVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKILSFMPSIAVISMDNYNDSSRIVDGNFDDPRLTDYDTLLQNLHDLKEGKPAQVPIYDFKSSSRTGYRTVEAPSSRIVIIEGIYALSEKLRTLLDLRVSVTGGVHFDLVKRVIRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQCPTYILKSARNVTVDQIKAVLSEDFKETTEQTYDIYLLPPGEDLETCQSYLRMRNKDGKYSLMFEEWVTDNPFVISPRITFEVSVRLLGGLMALGYTIATILKRNSHVYSDERVCVKLDWLEQLNRHYVQVQGRDRLVVKYVGEQLGLEGSYIPRTYIEQIQLEKLVNEVMALPDDLKTKLSLDEDLVSSPKEALSRASADRVAMRNKYLRSGMSQSYTNQRDKNLAKVTGYVAKNRGFGERNSDSSTAPVNQGAISHLSDQISALNDRMDEFTNRIEELNSKLTIKKNSPSQQNMLVQAEACNGSAPTSYFITSLGNGSLTGSKLTNSSSSSQLAKDSPLMDEISSIARSQRQIMHQLDNLNNLLRGSLGEKSHQTRTNRKSIAADSNSTGARVMVAVTIGCLGIFLMKDSGGSERERVMAT 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi188g00030 670 ProSiteProfiles CYTH domain profile. 248 410 IPR023577 -
Sebi188g00030 670 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 236 IPR027417 -
Sebi188g00030 670 Gene3D - 66 254 IPR027417 -
Sebi188g00030 670 PRINTS Uridine kinase signature 132 147 - -
Sebi188g00030 670 PRINTS Uridine kinase signature 224 237 - -
Sebi188g00030 670 PRINTS Uridine kinase signature 188 198 - -
Sebi188g00030 670 PRINTS Uridine kinase signature 65 82 - -
Sebi188g00030 670 PANTHER URIDINE KINASE 16 423 - -
Sebi188g00030 670 Pfam Phosphoribulokinase / Uridine kinase family 68 236 IPR006083 GO:0005524|GO:0016301
Sebi188g00030 670 Coils Coil 503 537 - -
Sebi188g00030 670 CDD UMPK_like 67 239 - -
Sebi188g00030 670 Gene3D - 255 412 - -
Sebi188g00030 670 Pfam CYTH domain 269 404 IPR023577 -
Sebi188g00030 670 SUPERFAMILY CYTH-like phosphatases 260 407 IPR033469 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi188g00030 Sebi-Chr188 470407 477193 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi188g00030 66 365 PRT Gene Family AT5G40870 25.321 2.96e-18 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi188g00030 K00876 - gmx:100781286 1161.75