LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi188g00028	ATGAAAGCAGGAGGGAATGGTACTAGTTCCTCTTCTGATGTAAACATGACATTAGCTGGTTTGCTTTCTCCTAAAGGTGTCAACTTTGAAGTTCAAGCTCTGATGGGTATTAAGAATTCTCTGGTGGATCCTCATTCTGCCTTAGGTAACTGGGATCCAGATGCTGTGGATCCCTGCAACTGGGCTATGGTCACTTGTTCTTCTGATCGTTTTGTGATTGCCCTTGGGATTCCAAGCCAGAATTTATCTGGTACTCTCTCATCAAGCATAGGCTCCTTAACAAACCTCCAGACTGTGCTGCTGCAGGATAATCATATATCAGGACCAATCCCTTCTGAGATTGGGAGGCTCCAAAAGCTTCAAACTCTTGATCTTTCTGACAATTTCTTCATTGGTCAACTTCCAGATACTCTGTCCCATATGAAGGGTCTCCATTATTTGCGGCTAAACAATAATAGTCTCACTGGACCAATTCCTTCCTCTTTGGCTAACATGACCCAGCTTGCCTTTTTGGATATCTCTTATAATAACTTGAGTGGACCTGTACCTAGATTAAATGCAAAAACATTCAATATTGTAGGCAATCCCCAGATATGTGCCACTGGAGTTGAGCAAAACTGCTTTAGAACAACATTAATTTCTTCTGCTACGAATAATACTCAAGATTCACAATCCTCCAATAGACCAAGTAGTCACAAAGTTGCTTTGGCGTTTGCTTCAAGCCTAAGCTGCATCTGCTTACTGATTCTGGGGTTTGGCGTCCTCCTCTGGTGGAGACAAAGATATAACAAGCAAATATTCTTTGATGTCAATGAACAACATCGTGAAGAGATTTGCCTTGGAAACCTCAAGAAGTTCCATTTCAGAGAACTTCAGGTTGCTACAAATAACTTCAGCAGCAAGAATTTGATTGGCAAAGGTGGTTTTGGAAATGTCTACAAAGGCTATCTCTCAGATGGTACAGTTATAGCAGTAAAAAGGCTTAAAGATGGCAATGCCATTGGAGGTGAGATCCAATTCCAGACTGAAGTTGAGATGATCAGCTTAGCTGTCCATCGGAATCTTCTTCGCCTGTATGGATTTTGCATGACAGCTACAGAGAGGCTCTTGGTTTATCCCTATATGTCAAATGGTAGTGTAGCTTCCCGTCTGAAAGCCAAGCCAGCTTTAGACTGGCCTACAAGGAAGAGGATAGCTTTAGGAGCTGGAAGAGGCTTGCTATATTTGCATGAGCAGTGTGACCCCAAGATTATTCACAGGGATGTTAAGGCTGCAAATATCTTGCTTGATGATTATTGTGAGGCTGTGGTAGGAGACTTTGGGTTGGCAAAGCTGTTGGACCACAGGGATTCACATGTGACAACAGCAGTGAGAGGCACTGTAGGGCATATAGCCCCAGAGTACCTCTCAACAGGCCAATCCTCTGAGAAAACAGATGTGTTTGGGTTTGGAATTCTTCTACTTGAATTGATATCTGGCCAAAGGGCTCTTGAATTTGGGAAAGCAGCAAACCAGAAAGGAGCCATGCTTGACTGGGTGAAGAAAATACATCAAGAGAAGAAAATTGACTTGTTAGTTGACAAGGACCTGAAAAACAACTATGATAGGATTGAACTAGATGAAATTGTTCAAGTGGCTCTTTTATGTACTCAGTACCTTCCAAGTCATAGACCCAAGATGTCTGAAGTAGTTAGGATGCTTGAAGGAGATGGGCTTGCAGAAAAATGGGAAGCCTCACAGAGAGCTGAATCAACAAGAAGTAGAGGAAATGAACTCTCCTCTTCAGAGCGCTATTCTGATCTTACTGATGACTCTTCATTGCTTGCTCAAGCAATGGAACTTTCTGGACCAAGATGA	1857	0.4254	MKAGGNGTSSSSDVNMTLAGLLSPKGVNFEVQALMGIKNSLVDPHSALGNWDPDAVDPCNWAMVTCSSDRFVIALGIPSQNLSGTLSSSIGSLTNLQTVLLQDNHISGPIPSEIGRLQKLQTLDLSDNFFIGQLPDTLSHMKGLHYLRLNNNSLTGPIPSSLANMTQLAFLDISYNNLSGPVPRLNAKTFNIVGNPQICATGVEQNCFRTTLISSATNNTQDSQSSNRPSSHKVALAFASSLSCICLLILGFGVLLWWRQRYNKQIFFDVNEQHREEICLGNLKKFHFRELQVATNNFSSKNLIGKGGFGNVYKGYLSDGTVIAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLRLYGFCMTATERLLVYPYMSNGSVASRLKAKPALDWPTRKRIALGAGRGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELISGQRALEFGKAANQKGAMLDWVKKIHQEKKIDLLVDKDLKNNYDRIELDEIVQVALLCTQYLPSHRPKMSEVVRMLEGDGLAEKWEASQRAESTRSRGNELSSSERYSDLTDDSSLLAQAMELSGPR	618

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi188g00028	618	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	27	209	-	-
	Sebi188g00028	618	SUPERFAMILY	L domain-like	30	192	-	-
	Sebi188g00028	618	ProSiteProfiles	Protein kinase domain profile.	298	553	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi188g00028	618	Gene3D	Ribonuclease Inhibitor	27	209	IPR032675	-
	Sebi188g00028	618	Pfam	Protein kinase domain	299	565	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi188g00028	618	Gene3D	Transferase(Phosphotransferase) domain 1	375	587	-	-
	Sebi188g00028	618	MobiDBLite	consensus disorder prediction	585	609	-	-
	Sebi188g00028	618	SMART	serkin_6	298	553	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi188g00028	618	Gene3D	Phosphorylase Kinase; domain 1	267	374	-	-
	Sebi188g00028	618	SUPERFAMILY	Protein kinase-like (PK-like)	277	568	IPR011009	-
	Sebi188g00028	618	Pfam	Leucine rich repeat N-terminal domain	30	67	IPR013210	-
	Sebi188g00028	618	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	28	578	-	-
	Sebi188g00028	618	Pfam	Leucine rich repeat	119	178	IPR001611	GO:0005515
	Sebi188g00028	618	ProSitePatterns	Protein kinases ATP-binding region signature.	304	326	IPR017441	GO:0005524
	Sebi188g00028	618	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	417	429	IPR008271	GO:0004672\|GO:0006468
	Sebi188g00028	618	FunFam	Somatic embryogenesis receptor kinase 1	267	374	-	-
	Sebi188g00028	618	FunFam	Somatic embryogenesis receptor-like kinase 1	375	587	-	-
	Sebi188g00028	618	MobiDBLite	consensus disorder prediction	575	618	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi188g00028	Sebi-Chr188	420901	424344	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi188g00028	17	618	Receptor kinase-like Gene Family	AT5G16000	75.123	0.0	940

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Sebi188g00028		Pkinase	8.4e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi188g00028	-		-	gmx:100804283	1110.13