Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi188g00012 ATGAGTCCTCTGATTAGAGTGGCAATAGGAGTAAACTTGATATGTGGTTCTCATACCTTCAAAATGTTCATGAAGTACTCAATTCTCCTTCACACTTACCTCAAATGGATATTGGATTTCCTTTACCACTTTATGCAATCTCCTTCTCAGCCTAGTGTGTGCCATTATGTGTCAACCCATGAAGATGTAGATTGCGCAGTGTGTCTCAGCAAAATGAGAGACAGAGAAGAGATTAGAGTGTTGCGGTGTCACCATGTGTTTCACAGAGATTGCTTGGATACTTGGGTGGGCTTCAACAAAGCCACTTGCCCTCTTTGCAGAGATTCACTACTGTGTTCAACAAGGGAGTGA 351 0.4245 MSPLIRVAIGVNLICGSHTFKMFMKYSILLHTYLKWILDFLYHFMQSPSQPSVCHYVSTHEDVDCAVCLSKMRDREEIRVLRCHHVFHRDCLDTWVGFNKATCPLCRDSLLCSTRE 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi188g00012 116 Pfam Ring finger domain 64 107 IPR001841 -
Sebi188g00012 116 PANTHER RING ZINC FINGER PROTEIN-RELATED 53 113 - -
Sebi188g00012 116 ProSiteProfiles Zinc finger RING-type profile. 65 107 IPR001841 -
Sebi188g00012 116 SMART ring_2 65 106 IPR001841 -
Sebi188g00012 116 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 111 IPR013083 -
Sebi188g00012 116 SUPERFAMILY RING/U-box 57 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi188g00012 Sebi-Chr188 208722 209072 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi188g00012 64 111 C3H Transcription Factor Family AT1G15100 54.167 7.27e-14 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi188g00012 K16282 - cave:132178402 91.2781