Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi188g00011 ATGTTCATAAAGTACTTAACTCTTGTTTACACTCACCTGAAATGGGTGTTAGATTTCCTTCTATATTATCCCTTTTACAAGCTCCATGATGTGCCAATAATTGGAAATCAAGAGATGAGTATATGCCATTATGAAGGCTCAGAGGAAGATGTAGATTGTGCTGTGTGTCTCTGCAAAATTGAAGAAGGAGATGAGATTAGAGTGCTGAGATGTGAACATATGTTTCACAAAGATTGCTTAAATAGATGGGAAAGTGGTTTCAAGAATTATGCCACTTGCCCTCTTTGCAGAGAATCAGTGGGCCCAAGAAGGGTCATCAGTGAGCTTGGTGCTCAAGTTCTCTTCTTTGAGTTTTGTTCTATCCGCAATGATGATGACCGTGATACATGGTGGCTACGCTGA 402 0.4005 MFIKYLTLVYTHLKWVLDFLLYYPFYKLHDVPIIGNQEMSICHYEGSEEDVDCAVCLCKIEEGDEIRVLRCEHMFHKDCLNRWESGFKNYATCPLCRESVGPRRVISELGAQVLFFEFCSIRNDDDRDTWWLR 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi188g00011 133 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 104 IPR013083 -
Sebi188g00011 133 ProSiteProfiles Zinc finger RING-type profile. 53 97 IPR001841 -
Sebi188g00011 133 SMART ring_2 53 96 IPR001841 -
Sebi188g00011 133 Pfam Ring finger domain 52 97 IPR001841 -
Sebi188g00011 133 PANTHER - 33 108 - -
Sebi188g00011 133 SUPERFAMILY RING/U-box 46 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi188g00011 Sebi-Chr188 186336 186737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi188g00011 48 114 C3H Transcription Factor Family AT1G53820 42.647 5.57e-13 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi188g00011 K16282 - mof:131154354 140.198