Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi188g00007 ATGTCAGCGGCGTCGCCGTCTCCGGCGTCTTCCACCGCCGCGCCACCGCCACAATCACAAACACCTTCTTCTTCCAACAATAGTCCGCCACCGTCCTCCGTCGCCACTCCGCCGCCGCGGCAACCCACTTCTCCTTCACCTAACACTTCAGCTTCGCCACCGCCAACAACCCCACCACCACCTCAGACCTCCCCACCGCCGGCCACCCCATTAGCTCCTCCCCCCGCCGTGACATCACCTCCTCCGGCGTCACAACCGCCTCCGGCCTCACCTCCATTGCCGCCACCTGCGGCTCCCCCTCCAACCCCTCCATCACGCCCACCTCCTCCGCCGCCCCAAGCGCCGCCGCCATCTTCTCCGGCACTTCCACCACCCCCATCGCCATCACCAGTTCCGCCACGAAGCTCTCCTCCACCGCCCCCGCCACCACGATCAGCTCCACCACCGTCAAACCCACCTAACAACTCATCTCCTCCACCGGCAGCACCGCCACCGGGGAATTCACCCCCTCCTCCAGCCGCCGTGCCACCACCCCGGCGTTCACCGCCACCCCGAAGTTCACCTCCACCGCCACAGTCTGCCCCGCCCCCCAGTAACTCAGCTCCTCCGGCATCACCGCCGGTGGCTGTGCCACCACCCAGGTCATCACCACCACCACCAGCAGCAGCAGCATCCACTCCTCCTCCTACCACACCAAGTCCTCAACTTGTTCCACCTTCAAATTCTACACCAGGGTCTCCTCCTTCACGCACGCTTCTTTCTCCGCCACCACCAACGCAGAACAGATCAGAAAACTCAAGCCCTGGAAGTGGTGGAATTAGTACTGGTGCTGTAGTGGCTATTAGTATATTCGGTGGTATTCTTTTGCTTGGCTTCATTGGAGTTGCTATCTGGTGCTTGAGGAGGCAAAAGAGAAAGGAACCTGTTTCTGATGGTTATGTCATGCCACCCACTCTTCCCTCTTCAACTGGATCAGATTCATCCTTTTTTATGACACATTCCTCTGCTCCTTTTATAAGAAGTGGCTCTGGCAGTGATGTTGTGTATACACCATCTGACCCTGGTGGACTTGGCAACTCAAGGTCATGGTTTACATATGAAGAACTAATCAAGGCCACAAATGGTTTCTCAAGTCAAAATCTTTTGGGTGAGGGTGGATTTGGTTCTGTGTATAAAGGATGTTTACCTGATGGGAGAGAGATAGCAGTCAAACAGCTGAAAGTTGGTGGAGGACAGGGGGAGAGAGAATTCAAAGCTGAAGTGGAAATTATTAGTCGCATACATCATCGCCATTTGGTTTCTTTAGTGGGATACTGCATTGAAGATAACAGAAGACTACTTGTCTATGACTATGTCCCTAACGATACTCTTTATTTTCATCTACATGGGGAAAGTAAGCCTGTGCTAGATTGGGCAAAGCGTGTTAAAATTGCAGCTGGTGCAGCTCGAGGAATAGCTTATCTCCATGAAGACTGTAATCCTCGGATTATTCATAGGGATATCAAGCCATCAAACATTCTTTTGGATCACAACTATGAAGCTCGAGTCTCAGATTTTGGGCTAGCCAAATTAGCTCTTGATGCATATACACATATATCTACACGTGTCATGGGAACTTTTGGGTATGTTGCCCCTGAATATGCATCAAGTGGCAAATTGACTGAGAAGTCTGATGTATTTGCTTTTGGAGTTGTGCTTTTGGAGCTCATTACCGGGCGGAAGGCGGTAGATGCATCCCAACCCTTGGGAGATGAGAGTCTAGTTGAATGGGCTCGACCTTTGCTGAGTCAAGCACTTGAGAGTGAAGAATTTGAGAGTTTGGTAGATACAAGGCTAGAAAGAAACTACATTGATAGTGAAATGTTTTGCATGATTGAAGTTGCTGCTGCTTGTGTGCGGCATTCAGCTGCAAAGAGACCTCGCATGGGACAGGTTGTTAGAGCTTTTGATAGCTTAGCAGCTTCAGATCTAACTAACGGAATGCGACTTGGGGAAAGCCAGGCCTTTGACTCTGCACAGCAATCTGAAGAAATAAGATTGTTTCGGAGGATGGCATTTGGTAACCAAAATTATAGCTCAGATTTTTTTAGCCAAGGTAGTTTGAATGCATGA 2112 0.5123 MSAASPSPASSTAAPPPQSQTPSSSNNSPPPSSVATPPPRQPTSPSPNTSASPPPTTPPPPQTSPPPATPLAPPPAVTSPPPASQPPPASPPLPPPAAPPPTPPSRPPPPPPQAPPPSSPALPPPPSPSPVPPRSSPPPPPPPRSAPPPSNPPNNSSPPPAAPPPGNSPPPPAAVPPPRRSPPPRSSPPPPQSAPPPSNSAPPASPPVAVPPPRSSPPPPAAAASTPPPTTPSPQLVPPSNSTPGSPPSRTLLSPPPPTQNRSENSSPGSGGISTGAVVAISIFGGILLLGFIGVAIWCLRRQKRKEPVSDGYVMPPTLPSSTGSDSSFFMTHSSAPFIRSGSGSDVVYTPSDPGGLGNSRSWFTYEELIKATNGFSSQNLLGEGGFGSVYKGCLPDGREIAVKQLKVGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIEDNRRLLVYDYVPNDTLYFHLHGESKPVLDWAKRVKIAAGAARGIAYLHEDCNPRIIHRDIKPSNILLDHNYEARVSDFGLAKLALDAYTHISTRVMGTFGYVAPEYASSGKLTEKSDVFAFGVVLLELITGRKAVDASQPLGDESLVEWARPLLSQALESEEFESLVDTRLERNYIDSEMFCMIEVAAACVRHSAAKRPRMGQVVRAFDSLAASDLTNGMRLGESQAFDSAQQSEEIRLFRRMAFGNQNYSSDFFSQGSLNA 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi188g00007 703 MobiDBLite consensus disorder prediction 1 271 - -
Sebi188g00007 703 MobiDBLite consensus disorder prediction 256 271 - -
Sebi188g00007 703 MobiDBLite consensus disorder prediction 31 255 - -
Sebi188g00007 703 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 289 684 IPR047117 -
Sebi188g00007 703 ProSitePatterns Protein kinases ATP-binding region signature. 382 404 IPR017441 GO:0005524
Sebi188g00007 703 Gene3D Transferase(Phosphotransferase) domain 1 452 669 - -
Sebi188g00007 703 SMART serkin_6 376 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi188g00007 703 Gene3D Phosphorylase Kinase; domain 1 356 451 - -
Sebi188g00007 703 Pfam Protein kinase domain 378 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi188g00007 703 SUPERFAMILY Protein kinase-like (PK-like) 358 647 IPR011009 -
Sebi188g00007 703 FunFam proline-rich receptor-like protein kinase PERK8 452 663 - -
Sebi188g00007 703 MobiDBLite consensus disorder prediction 16 30 - -
Sebi188g00007 703 ProSitePatterns Serine/Threonine protein kinases active-site signature. 496 508 IPR008271 GO:0004672|GO:0006468
Sebi188g00007 703 ProSiteProfiles Protein kinase domain profile. 376 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi188g00007 703 CDD STKc_IRAK 382 652 - -
Sebi188g00007 703 FunFam Proline-rich receptor-like protein kinase PERK8 349 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi188g00007 Sebi-Chr188 108774 113348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi188g00007 199 645 Trihelix Transcription Factor Family AT1G68690 62.826 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Sebi188g00007 Pkinase 3.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi188g00007 - - gmx:100794393 768.459