Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi188g00005 ATGAGGGGTGAAAAGAGGAAAAAGCTGCATCTTAGTAAGATCTACTCATTTGCATGTGGGAGATCATCTTTCAAGGGAGATCATTCACAGATTGGGGGACGTGGCTATTCCATGGTCAAAGAGGGTATTGAAGATTGGCGTCGCAAAAAGCAGCTAGTGGAATACTGCCGCAGGATATGGAGGGTGAACAATAGAAGAGTTAAAGTGCACAAAGGACATGGAACCTATGAGGATGCAGTCTGCTATGTTGAGACCATGAACTTGGATTGGGAGACAAATTTGAAGTTAAAACAAGGGTTGGAAGTAACTTCTTCCTTACATGAGGAGTTTGAGTTCAGTGATTTAAAGCTACAATCAAATGTGAAAGATCCAAATGCAAATTTATATTCATTTGTGGGGAGCATGGAGTTTGAAGAGCAACAACATCCCCTTTCTCCTCAGCAACTTCTTCTGAGAGACTCTACTAACTTCCGAAATACGGACTACATATTTGGAGCTGTTGTCTTCACTGGTCATGACACAAAGTTTGACAGCCTTAATGTTATATGGCTTCTTCATTCCCTCTCATTGTATGTATCAATAGAAATTGTCAAAGTTCTTCAAAGCATCTTCATCAATCAAGATATCCATATGTACTATGAAGAAGCAGACAAACCAGCCCATGCCCGTACTTCAAACTTGAATGAGGAACTTGGCCAAGTTGACACAATACTTTCTGATAAAACTGGAACTCTGACCTGCAATTCAATGGAGTTCATCAAATGTTCCATTGCTGGGGTAGCATATGGCCGTGGTGTTACAGAGGTTGAGAGGCCATGGATAGGAAAATGGATCATGAATGGAAACTGGGTTAATGAGTCTCATGTAGATGTTATCCAGAATTTTTTTCGCTTATTGGCAATCTGTCATACAGCCATTCCAGAAGTGGATGAAGGCACAGGCAATGTCTCATATGAGGCTGAGTCTCCAGATGAAGCAGCATTTGTGATTGCAGCAAGAGAAATTGGTTTTGAATTCTATAAAAGGACTCAGACTAGTTTATCGATGTATGAATTGGATCCAGTTTCTGGTACAAAGTTGAAAGTGTCATGTTTGAAAAGGCTTGCCAAGGATGGGAGGGAGTTTGAAGAGAAAACCTCGGAACATGAGAAGGGTGGAGACAAAGTCGGGCCTATTGCCAAGGCTTCAAGGGAAAGTATCCGCCGTCAGATATCTGAAGCTGCTCAACAGGTTACTACCGGAAAGATGCCAGAGGGAACCTCTCAGAAAGCATTTGCTCTAATTATTGATGGAAAATCACTTACTTATGCTCTAGAGGATAATACTAAGGGCATGTTTTCTAGAGCTTGCGAATTCGTTGTGCATCAGTTATCTGTTGCCCGCTCGTCACCTAAGCAGAAAGCACTGGTCACTAGGCTGGTCAAATCTGGAACTGGTAAAACTACATTAGCTATTGGAGATGGAGCTAATGATGTTGGAATGCTTCAAGAAGCAGATATAGGGGGCTTTATGTCTAGTGATATTGCAATTGCACAGTTCCGTTATTTGGAAAGATTACTTCTTGTACATGGACATTGGTGTTACCGGAGGATCTCATCAATGGATGTATCTGCTCGGTACTGTCAGAAATTTCCTATGTTATATCAAGAAGGTGTACAAAATATCCTCTTTAGCTGGCGTCGAATACTTGGCTGGATGCTTAATGGATTTATCAGTGCCATAATAATATTCTTCTTCTGCACAAAGGCAATGGAGATTCAGGCCTTTGATGAGGAAGGAAGAACAGCTGGAAGGGATATACTGGGAGCAACAATGTATACATGTGTGGTTTGGGTTGTAAACTTGCAGATGGCACTTGCTATAAGTTACTTCACCTTGATTCAACATATTTTCATCTGGGGGACCATTGCTTTATGGTATCTTTTCCTCATAGTGTATGGAGCAATACCTTCAAGCTTTTCTACAAATGCTTACAAAGTCTTCATTGAAACTCTTGCTCCATCTCCTTCCTTTTGGATTGTGACATTGTATGAGGGGAAGGCAAATGATCCTGAAATCATTGAATTGGTGAGGCAGGGATCATTGAGGCCAACAACTGTGGGTTCAACAGCTCGTTTAGCAGCTAAGACTAACCACATTAGAGAGAATTCTACTAACCATAGATAA 2166 0.4123 MRGEKRKKLHLSKIYSFACGRSSFKGDHSQIGGRGYSMVKEGIEDWRRKKQLVEYCRRIWRVNNRRVKVHKGHGTYEDAVCYVETMNLDWETNLKLKQGLEVTSSLHEEFEFSDLKLQSNVKDPNANLYSFVGSMEFEEQQHPLSPQQLLLRDSTNFRNTDYIFGAVVFTGHDTKFDSLNVIWLLHSLSLYVSIEIVKVLQSIFINQDIHMYYEEADKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGVAYGRGVTEVERPWIGKWIMNGNWVNESHVDVIQNFFRLLAICHTAIPEVDEGTGNVSYEAESPDEAAFVIAAREIGFEFYKRTQTSLSMYELDPVSGTKLKVSCLKRLAKDGREFEEKTSEHEKGGDKVGPIAKASRESIRRQISEAAQQVTTGKMPEGTSQKAFALIIDGKSLTYALEDNTKGMFSRACEFVVHQLSVARSSPKQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADIGGFMSSDIAIAQFRYLERLLLVHGHWCYRRISSMDVSARYCQKFPMLYQEGVQNILFSWRRILGWMLNGFISAIIIFFFCTKAMEIQAFDEEGRTAGRDILGATMYTCVVWVVNLQMALAISYFTLIQHIFIWGTIALWYLFLIVYGAIPSSFSTNAYKVFIETLAPSPSFWIVTLYEGKANDPEIIELVRQGSLRPTTVGSTARLAAKTNHIRENSTNHR 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi188g00005 721 Gene3D - 367 515 IPR023214 -
Sebi188g00005 721 SUPERFAMILY HAD-like 226 515 IPR036412 -
Sebi188g00005 721 NCBIfam HAD-IC family P-type ATPase 453 534 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi188g00005 721 Pfam Phospholipid-translocating P-type ATPase C-terminal 535 676 IPR032630 -
Sebi188g00005 721 Pfam Phospholipid-translocating P-type ATPase C-terminal 504 534 IPR032630 -
Sebi188g00005 721 SUPERFAMILY Calcium ATPase, transmembrane domain M 38 676 IPR023298 -
Sebi188g00005 721 Gene3D - 239 366 IPR023299 GO:0000166
Sebi188g00005 721 ProSitePatterns E1-E2 ATPases phosphorylation site. 240 246 IPR018303 -
Sebi188g00005 721 PRINTS P-type cation-transporting ATPase superfamily signature 27 41 - -
Sebi188g00005 721 PRINTS P-type cation-transporting ATPase superfamily signature 485 504 - -
Sebi188g00005 721 PRINTS P-type cation-transporting ATPase superfamily signature 238 252 - -
Sebi188g00005 721 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 535 676 - -
Sebi188g00005 721 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 245 339 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi188g00005 Sebi-Chr188 97448 104145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi188g00005 383 708 Primary Pumps ATPases AT3G25610 53.286 4.14e-131 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi188g00005 K01530 - gmx:100785037 490.73