Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi187g00023 ATGGCGTATCATCCAATCTTCGCAAAGAAATTTTCTTCTCATTCTGGAATTTTTCCAGAAAATCAAAATCCCAGCATAAAATTAGAGTTCCCTGACATGTTTCCCTTGCAACAGACCTTGTCTCGCTCACCACCTCCACCTCCACCAAATAGCACCACCCTCTTGTACCAAAACAACTTCCACCATATTCAGTGTCATCCCTTAAATGGGGCTAACCATCACCCTGGCAATTTTGTTTTGGAGGGTCTTCCCTCTAAAAGCCAATTTTCAATGATCCCAACTCCTCCTTCGGGTGATTCATACAACCCCATGCCATTTGCACCAAACAAAAATGAAATGGAAGCAATGCATGGCTACCTAAACAAAGGCAAGGGCATATGGGACTTTTCCCAGAAAATCCCTCTTCGGGATGGTGCAGCTTCACAACCTTATATGGGTCCTTCTCATTCATCATCATATGCACCATTGCTACTGCCAATGAAGCCTAAGTTTCAAGACCATCTTTCACCCATGGTTGGAACAGGAAATGGTAACTGGGACATTGACCAGAAAGTTGTCGATAATGACAAGTTGCAACAAAAGAGGGTGCAGAGTGAAAATCAACAAAAGGATACTAACACTGTCAAAGGCCAATGGACTAAAGAAGAGGATAGGGTACTTGTGCAATTGGTGAAACGCTTTGGGCTAAAAAAATGGTCGCAGATGGCGAAACTATTGAATGGCAGGATTGGGAAACAATGCAGAGAGAGATGGCATAACCATCTCCGACCAAACATTAGGAAGGAAGCATGGAATGAAGATGAGGACAAAATCCTCATTGAAGCTCATAAGGAAGTTGGGAACAAGTGGGCAGAAATTGCAAGGAGATTGCCGGGCCGCACTGAGAATACCATCAAGAACCATTGGAATGCCACAAAGAGGCGCATGAACACCAAGAAGAAGAACAAGCGCACTTGTGGTTCTAAAGGAAAACTGCTTCAAAACTACATAAGAGAAGTCATTGTAGCTGAAAAAGCTGGAAAGGAATTGAAGAAATCCATGAAAAAGATGAACATAAGGAGTGAGGATCACAATAATGACCTAAGTATCCTTTGTGTTCAGTATGAAAGCTCAGATGGTGACTTATGCTCTGAGGATTGGACTGCTCAGGATGAAGTTGGTTGGAGCATATTGCAACAACTTGTGCCAATGATGCATATTGGAGATGAAATTGCAAGTGAGTCTATTGTGGAAGATGGCACAGAGGATTATGTGGCTGCAATGGAGATGGAGCCAGAGGTTCCCATGAAGAAGGAAATGGATCTCATGGAGATGATCTATAAAAACCATTAA 1332 0.4272 MAYHPIFAKKFSSHSGIFPENQNPSIKLEFPDMFPLQQTLSRSPPPPPPNSTTLLYQNNFHHIQCHPLNGANHHPGNFVLEGLPSKSQFSMIPTPPSGDSYNPMPFAPNKNEMEAMHGYLNKGKGIWDFSQKIPLRDGAASQPYMGPSHSSSYAPLLLPMKPKFQDHLSPMVGTGNGNWDIDQKVVDNDKLQQKRVQSENQQKDTNTVKGQWTKEEDRVLVQLVKRFGLKKWSQMAKLLNGRIGKQCRERWHNHLRPNIRKEAWNEDEDKILIEAHKEVGNKWAEIARRLPGRTENTIKNHWNATKRRMNTKKKNKRTCGSKGKLLQNYIREVIVAEKAGKELKKSMKKMNIRSEDHNNDLSILCVQYESSDGDLCSEDWTAQDEVGWSILQQLVPMMHIGDEIASESIVEDGTEDYVAAMEMEPEVPMKKEMDLMEMIYKNH 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi187g00023 443 FunFam Transcriptional activator Myb isoform A 208 261 - -
Sebi187g00023 443 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 260 310 IPR017930 -
Sebi187g00023 443 PANTHER MYB PROTEIN-RELATED 192 321 - -
Sebi187g00023 443 CDD SANT 263 306 IPR001005 -
Sebi187g00023 443 Gene3D - 262 327 - -
Sebi187g00023 443 Gene3D - 208 260 - -
Sebi187g00023 443 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 204 259 IPR017930 -
Sebi187g00023 443 ProSiteProfiles Myb-like domain profile. 204 255 IPR001005 -
Sebi187g00023 443 SMART sant 208 257 IPR001005 -
Sebi187g00023 443 SMART sant 260 308 IPR001005 -
Sebi187g00023 443 CDD SANT 212 255 IPR001005 -
Sebi187g00023 443 Pfam Myb-like DNA-binding domain 212 270 - -
Sebi187g00023 443 ProSiteProfiles Myb-like domain profile. 256 306 IPR001005 -
Sebi187g00023 443 SUPERFAMILY Homeodomain-like 207 302 IPR009057 -
Sebi187g00023 443 Coils Coil 181 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi187g00023 Sebi-Chr187 1077130 1079841 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi187g00023 201 333 MYB Transcription Factor Family AT4G18770 66.176 2.48e-58 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi187g00023 Myb_DNA-bind_6 1.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi187g00023 K09422 - lang:109354158 316.235