Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi187g00019 ATGAACTCCAAAAGCTTCTCAAATGCAAAGAAGAACCCATCATGGGTTCTCTTCACCATAATTTTTCTGTCATCTTTATCTCACTCACTTTCTGACCCAAGAATCTCAGAAGCTGGACACTATTGTGGCACAGCCAAAGCTCCAATGAAAGCCAATTACATCCCAAGTTTCATCAAAGAAATGGAGAGCCTCTCTCAGTCAGTGACCAACCACAATTGGGGTACTCACTTTGTCAACATCTCAGGATCCATTCCCATCTATGGCTTTGCACAATGCTTCCAAGACCTTTCACACACTGATTGTCTTCTCTGCTATGCTGCAAGCCGCACCAAGCTCCCTCGCTGTCTCCCTTCTCTCTCTGCTCGCATTTACCTTGATGGGTGCTTCCTTCGCTATGACAACTACAGCTTCTACTCAGAGGACACTGACCCTTTGAGGGATACTGTGAACTGCTCTTCTCAGAAGGGTGTGGAGGGAGCAGGTGGGTTTGCTGTGGGAGATGTTGAGGGTGTTTATGCATTGGCACAGTGTTGGAACACTGTTGGGAATGATGGGTGTAGAGATTGCTTGAGGAAAGCTGGGAAGGAGGTAAGAGGTTGCTTGCCTAAGAGGGAAGGGAGGGCCTTGAATGCTGGGTGTTATCTGAGATATTCAACAGAGAAATTCTACAATGAAAAAGGTGCATCAATGGTGGAAATGTCCTATGTTGATGCCATTGAGTTCCAATTTTCAGGATCAGGAAACAATAATCTTGGTCAGGTTTCCTCTTTCATCAGCAAATCTAGTTTGAATTACAAATATGAAACTCTTGAGAAGGCCACAGATTACTTCAACTCTTCAAGAAAAATAGGCCAAGGAGCAGCTGGTTCTGTTTTCAAAGGCATTCTCCCAAATGGGAAAGTTGTTGCCGTTAAGAGATTGATCTTCAATAACAGGCAATGGGTGGATGAGTTCTTCAATGAAGTGAATTTGATTAGCGGAATTGAACACAAGAACCTTGTCAAACTATTGGGTTGTAGCATTGAAGGCCCTGAGAGCCTTCTTGTGTATGAGTACTTGCCCAAAAAGAGTTTAGATCAATTTATCTTTGAAAAGAACAGAACTCAGATTCTAAATTGGAAGCAGCGGTTTAATATCATTCTTGGAACAGCAGAAGGGCTTGCTTATCTCCATGAAGGCTCTAAAATAAGAATCATCCACAGAGACATCAAAAGCAGCAATGTTCTCCTAGATGAGAATCTCACTCCTAAGATTGCAGATTTTGGTCTTGCCCGTGCAGTTAAAATTTGCTGCAGTGAGTACTATCAGTGCAGAGGTTACATGGCTCCTGAGTACCTAGTTCGAGGACAACTTACAGATAAAGCTGATGTCTATAGTTTTGGGGTACTTGTTCTGGAGATAATATGTGGCAGGAGGAACAATGTCTTCAGAGAGGACTCTGGCTCACTTCTACAAACTGTTTGGAAGCTTTACCGATCAAACACATTGATTGAGGCTGTTGATTCTAGCTTGGGAGATGATTTTCCTGCAACTGAAGCAACAAGGGTGTTTCACATTGGATTGCTTTGCACACAAGCTTCTGCTTCCCTGAGGCCATCCATGACCCAAGTTGTTCACATGTTAAGAAACTCAAATGTAGATGTTCCAACACCAAATCAACCCCCATTTTTGAACACTGGAATGCTAGACTCAGACAGCTCCATTAGGTCTTATAGCACAAACAGCTTTGTATCCAATGCCTTAAAGAAGATTGGAGTGTCCCATAGCTACTCAGAGTCATCTAGTTCACGAAACTCAGATCAGCCATCAAGAAGTGAAGAAACTATTATCCAAGCTTGA 1839 0.429 MNSKSFSNAKKNPSWVLFTIIFLSSLSHSLSDPRISEAGHYCGTAKAPMKANYIPSFIKEMESLSQSVTNHNWGTHFVNISGSIPIYGFAQCFQDLSHTDCLLCYAASRTKLPRCLPSLSARIYLDGCFLRYDNYSFYSEDTDPLRDTVNCSSQKGVEGAGGFAVGDVEGVYALAQCWNTVGNDGCRDCLRKAGKEVRGCLPKREGRALNAGCYLRYSTEKFYNEKGASMVEMSYVDAIEFQFSGSGNNNLGQVSSFISKSSLNYKYETLEKATDYFNSSRKIGQGAAGSVFKGILPNGKVVAVKRLIFNNRQWVDEFFNEVNLISGIEHKNLVKLLGCSIEGPESLLVYEYLPKKSLDQFIFEKNRTQILNWKQRFNIILGTAEGLAYLHEGSKIRIIHRDIKSSNVLLDENLTPKIADFGLARAVKICCSEYYQCRGYMAPEYLVRGQLTDKADVYSFGVLVLEIICGRRNNVFREDSGSLLQTVWKLYRSNTLIEAVDSSLGDDFPATEATRVFHIGLLCTQASASLRPSMTQVVHMLRNSNVDVPTPNQPPFLNTGMLDSDSSIRSYSTNSFVSNALKKIGVSHSYSESSSSRNSDQPSRSEETIIQA 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi187g00019 612 ProSiteProfiles Gnk2-homologous domain profile. 35 137 IPR002902 -
Sebi187g00019 612 SUPERFAMILY Protein kinase-like (PK-like) 263 572 IPR011009 -
Sebi187g00019 612 Gene3D Transferase(Phosphotransferase) domain 1 353 550 - -
Sebi187g00019 612 MobiDBLite consensus disorder prediction 588 612 - -
Sebi187g00019 612 FunFam Cysteine-rich receptor-like protein kinase 2 246 352 - -
Sebi187g00019 612 Pfam Salt stress response/antifungal 163 219 IPR002902 -
Sebi187g00019 612 Pfam Salt stress response/antifungal 56 135 IPR002902 -
Sebi187g00019 612 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 87 591 - -
Sebi187g00019 612 FunFam Cysteine-rich receptor-like protein kinase 3 140 222 - -
Sebi187g00019 612 Pfam Protein tyrosine and serine/threonine kinase 279 541 IPR001245 GO:0004672|GO:0006468
Sebi187g00019 612 Gene3D Phosphorylase Kinase; domain 1 242 352 - -
Sebi187g00019 612 Gene3D - 143 222 IPR038408 -
Sebi187g00019 612 Gene3D - 36 137 IPR038408 -
Sebi187g00019 612 SMART serkin_6 277 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi187g00019 612 ProSiteProfiles Protein kinase domain profile. 277 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi187g00019 612 FunFam Cysteine-rich receptor-like protein kinase 2 353 549 - -
Sebi187g00019 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 398 410 IPR008271 GO:0004672|GO:0006468
Sebi187g00019 612 FunFam Cysteine-rich receptor-like protein kinase 2 35 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi187g00019 Sebi-Chr187 947320 951011 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi187g00019 16 425 Receptor kinase-like Gene Family AT5G40380 52.772 2.47e-163 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi187g00019 PK_Tyr_Ser-Thr 4.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi187g00019 - - gmx:100790404 950.273