Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi187g00005 ATGCCACACTCCAACCTTGGCATTTCCCACATTCCCAAATGGCACACCTTCATCTGCAACTACAACAAGCCCCAAACCCGCTTTCTCCTCTGCTTCACCGAATCGGGGCTCTCCAAAAACTTTCGGGTCAGGAGACCACAAACCTGTTGCCGACTCGCGGCGTCAGAGAGCAAGGACGACGACGGTTCTGGGTTCCAGAATGTACCCGGAAAACGAGTCGGGTTCGTGGCGTCCATTTTACCCGGAGGCAGATGGTGGACCTTGCCGGAGCACCCGGAAGACGACGATGCGGAGGCGACGGCGGCCATGCTCGCTCTGCGGCGAATGTGGGAGTTGGTTGCCGATGAGCGATGGGTTACGTTTGTGGCGTTTGGGTCCCTTCTTGTCGCTGCGCTTTCAGAAATCACCATCCCAAGTATATTGGCAGCGTCAATATTTTCAGCACAGAGTGGTGAGACCATGGCATTCTCTAGGAAGGCTGTATTTCTGGCCGTTCTTTGTTTAACTTCAGGGATTTGCAGTGGTCTCCGAAGTTGCTGCTTTGGAATTTTGAATGTAACCTTGGTAAAGCGTCTACGAGAAAATTTGTATATAGCCATTCTTTTTCAGGACATATCCTACTTTGATAAAGAAAAAGTCGGTGCCTTAACAAGCAGGCTTGCAGCAGATTGTCAACGACTATCCCATGTTATAGGAAATGACCTTCAGTTGATATTACGCAACACTTTGCAGGGAGCAGGAGCAATGATTAATTTGCTGGCTTTATCTTGGCCTCTGGCATTATCTGCATTAGTGATTTGTTCTATGTTATCTGCAATCTTCCTGGTTTATGGCTGGTATCAAAGAAAAGCAGCAAAGTTAACCCAAGATTTCACAGCCTGTGCCAATGACGTAGCTCAGGAAACACTTTCTTTGATAAGAACTGTCCGAGTGTATGGAACAGGAGAAAAAGAATTTGGAAGGTACAAGAAATGGCTACAGAAATTAGCATTTATAAACAGTCGAGAGAGTGTGGCTTATGGGCTCTGGAACCTGAGCTTTAACACCCTTTACCGCTCAACTCAGATATTTGCAGTGCTGTTAGGAGGAATGTCTGTTCTGAATTGTTGTGTAACTGTTGAGCAACTTACTAAGTATGTATTATACTGTGAGTGGTTGATTTATGCTACTTGGAGGGTGACAAACAGCTTATCATCATTACTGCAGTCCATTGGAGCATCTGAAAAAATTTTCCAACTGATGAATCATCTGCCCAGTGACCAATTCTTAGCCAAAGGAGTTAAGTTGCCGAGGTTAATGGGGCACATTCAGTTTGTAAATGTATCATTTCATTATCCTTCAAGGATTATGATGCCTGTTCTAGAACACTTAAACTTCTCTGTAGAAGAAAATCAAGTCATTGCCATTGTTGGTCTGAGTGGTAGTGGAAAGAGCACATTGCTCAACCTTTTACTTCGTCTCTATGAGCCTAGTAGTGGTCAGATATACATTGATGGATTCCCTCTTAAAGAGTTGGATATCAGGTGGCTGAGGCAGAAAATCGGTTATGTTCCACAGGAATCCCATCTCTTTCACATGGACATTAGGTCAAACATAAAATATGGTTGCCCTAGGAACATAGAACAAGAAGATATTGAACGGGCAGCAAAACAAGCCTATGCCCATGACTTTATTTCTTCACTTCCTAATGGCTATGAAACCCTTGTTGATGACAATGTACTTAGTGGGGGACAAAAGCAGCGAATTGCCATAGCCAGGGCCATTCTTAGGAACCCAGTTATTATGATACTTGATGAAGCTACCAGTGCCCTAGATTCTGAGAGTGAGCATTATATCAAGGAGGTGTTGTTTGCGTTAAAAGATGAATCTAAACCACGAACCATCATTATCATAGCACATAGGCTTTCTACTATTAAAGCTTCTGACAGGATCTTTGTTATGGATGATGGTCGCATGATTGAGATGGGAAACCATGAAGAGCTTCTGCTCAAGGATGGGCTCTATGCAAAGTTGCATAATATTCAAGAAGATATTTTGACTTGA 2043 0.4386 MPHSNLGISHIPKWHTFICNYNKPQTRFLLCFTESGLSKNFRVRRPQTCCRLAASESKDDDGSGFQNVPGKRVGFVASILPGGRWWTLPEHPEDDDAEATAAMLALRRMWELVADERWVTFVAFGSLLVAALSEITIPSILAASIFSAQSGETMAFSRKAVFLAVLCLTSGICSGLRSCCFGILNVTLVKRLRENLYIAILFQDISYFDKEKVGALTSRLAADCQRLSHVIGNDLQLILRNTLQGAGAMINLLALSWPLALSALVICSMLSAIFLVYGWYQRKAAKLTQDFTACANDVAQETLSLIRTVRVYGTGEKEFGRYKKWLQKLAFINSRESVAYGLWNLSFNTLYRSTQIFAVLLGGMSVLNCCVTVEQLTKYVLYCEWLIYATWRVTNSLSSLLQSIGASEKIFQLMNHLPSDQFLAKGVKLPRLMGHIQFVNVSFHYPSRIMMPVLEHLNFSVEENQVIAIVGLSGSGKSTLLNLLLRLYEPSSGQIYIDGFPLKELDIRWLRQKIGYVPQESHLFHMDIRSNIKYGCPRNIEQEDIERAAKQAYAHDFISSLPNGYETLVDDNVLSGGQKQRIAIARAILRNPVIMILDEATSALDSESEHYIKEVLFALKDESKPRTIIIIAHRLSTIKASDRIFVMDDGRMIEMGNHEELLLKDGLYAKLHNIQEDILT 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi187g00005 680 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 436 674 IPR003439 GO:0005524
Sebi187g00005 680 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 428 675 IPR027417 -
Sebi187g00005 680 CDD ABC_6TM_TAP 123 410 - -
Sebi187g00005 680 Pfam ABC transporter 454 602 IPR003439 GO:0005524
Sebi187g00005 680 PANTHER ABC TRANSPORTER B FAMILY 101 674 IPR039421 -
Sebi187g00005 680 SUPERFAMILY ABC transporter transmembrane region 107 420 IPR036640 GO:0005524|GO:0016020
Sebi187g00005 680 SMART AAA_5 463 651 IPR003593 GO:0016887
Sebi187g00005 680 Pfam ABC transporter transmembrane region 124 383 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi187g00005 680 ProSitePatterns ABC transporters family signature. 574 588 IPR017871 GO:0005524|GO:0016887
Sebi187g00005 680 FunFam Multidrug ABC transporter ATP-binding protein 428 678 - -
Sebi187g00005 680 Gene3D ABC transporter type 1, transmembrane domain 101 420 IPR036640 GO:0005524|GO:0016020
Sebi187g00005 680 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 121 402 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi187g00005 680 Gene3D - 427 678 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi187g00005 Sebi-Chr187 213164 234944 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi187g00005 191 676 Calmodulin-binding Proteins AT2G36910 34.109 1.79e-72 253