Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi186g00040 ATGGTTTTGGTGGATTCTGAGGGTGGGAGGATACAGGCAAGCATCCGTAAGCCAATGATGAGGAAATTTGGTAATGTGATTGTCGAAGGAGAGGTGTACAAGATGATTTATTTTTCTGTTGTGAAGAACGTTAGTAACTTTCGGGCCACAAAACATGAATTCAAGCTGATTTTCAACAGTAGGACTAGGGTCTTCCGTGCTGAAAGTCTACTCATACCAGAGTATGGCTTATCACTTTCTTCCTCTGAGGATATAAGGAATACTAAAGTGGAATCTGAATTTCTGTATGACATGATGGGCTTACTTACTGTTGTGTCGGCTGAGAAGAATATTGTGAAAGATGGCAAAACCACACGATTGATTATGCTTGAGCTTACTGATGATAAGGGTAAGATAAGGTGCACTCTTTTCGGGGACTTTGTTGATAAAGTGAATGAATTCCTCTCAATGAGTGGTAATCAGTTAACTATTGTTATCATTCAATTTGCAAGAGTTAACACTTACAAGGGTGATGTTGGTTTGGTCAATATTTTTAACACCTCAAGGTTGTTGTGGAATCCTCAAATTGTTGAAGCAATTGATTTCAGAAAAAGTGTTGCTTGTCATGAGGTGGACTCTGATATTTCTATTGGGTTTCTTGATGATGAATTCCCATCATTAACCATGAAGGAGGAATTTTTAAATTCATTCCCTAGGAAGAACCTTGAAGAGTTACAAACATGTGAAGAGGATGGTTTCTTCATTGTCCTTGGTACTATTGTATCTATCATTGATGAGCAATGGTGGTATTTAGCATGTAGCTGCAACAGATCTGTTAGCACTGATGATGAGGATAAATATTATTGTACCAATTGTGCAACCTATGTCTGTGAAGTGACTCCAAGGCAAGATTGTGTGAAAAAAATATGTGATGATCTTGAAATCATTGAAGCATTTAAGACAGATGCCTCTATTGTGACACCCCAGAAGCTGAAGTTTTTTCCCAAGTTTGGTGACTTATCTTCTCCCAAGTTGTCATCTGAAAAATCAAAAGTTTTGGAAGAAGAATTTCCTATTCTCACACAACCTGATTTTTCCAATTTTGAGAAGGGGGACTCTTCTTCATTTGCTGGAAAAGATGCTGATGATTCCAGTAAGAGTTTTTTGGAAGGCATGACTTTCTCTGATAATCCATTTGTTCCTGATAGTGTCCAAGACATGGGTAATTTACCTGATAGTGAAGTTTCTACAATTTCAATGACTGAAACATCGGAAGTTGCTGTTAATGATTATCCTGATGGAAAGAAAGAAGTAGATAATCCCAGTATCCTTAATGCTGTCCAGAAGAGAAAGTTGAGGTTGAAAAATGTTAAGATAGAGAAGGATTAG 1368 0.3743 MVLVDSEGGRIQASIRKPMMRKFGNVIVEGEVYKMIYFSVVKNVSNFRATKHEFKLIFNSRTRVFRAESLLIPEYGLSLSSSEDIRNTKVESEFLYDMMGLLTVVSAEKNIVKDGKTTRLIMLELTDDKGKIRCTLFGDFVDKVNEFLSMSGNQLTIVIIQFARVNTYKGDVGLVNIFNTSRLLWNPQIVEAIDFRKSVACHEVDSDISIGFLDDEFPSLTMKEEFLNSFPRKNLEELQTCEEDGFFIVLGTIVSIIDEQWWYLACSCNRSVSTDDEDKYYCTNCATYVCEVTPRQDCVKKICDDLEIIEAFKTDASIVTPQKLKFFPKFGDLSSPKLSSEKSKVLEEEFPILTQPDFSNFEKGDSSSFAGKDADDSSKSFLEGMTFSDNPFVPDSVQDMGNLPDSEVSTISMTETSEVAVNDYPDGKKEVDNPSILNAVQKRKLRLKNVKIEKD 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi186g00040 455 SUPERFAMILY Nucleic acid-binding proteins 1 68 IPR012340 -
Sebi186g00040 455 Gene3D - 222 312 IPR012340 -
Sebi186g00040 455 CDD RPA1_DBD_B_like 97 199 - -
Sebi186g00040 455 CDD RPA1_DBD_A_like 1 64 - -
Sebi186g00040 455 Gene3D - 72 206 IPR012340 -
Sebi186g00040 455 SUPERFAMILY Nucleic acid-binding proteins 233 307 IPR012340 -
Sebi186g00040 455 Pfam Domain of unknown function DUF223 1 69 IPR003871 -
Sebi186g00040 455 Gene3D - 1 68 IPR012340 -
Sebi186g00040 455 SUPERFAMILY Nucleic acid-binding proteins 83 200 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi186g00040 Sebi-Chr186 1183036 1185739 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi186g00040 3 285 Core DNA Replication Machinery Family AT2G06510 24.422 1.46e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi186g00040 - - lja:Lj1g3v3385890.1 281.952