Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi186g00002 GTTTCAGGACTCAATATTTTACAACTGCTGAAGGTTTCACAGCAGTGTCTCCCTGATGATTTGGAACCTGAAACATCATCTGCCATTAAAGAAGCTATTGTGGAACAACTGGACGGTGTAGGACCCAGTCCAGAGGTCCTAACAAAGATTGCTGAGAACCTGAGCCTCAGTTCTAATCAAGAGGTTCTGATTGAGGCTGTGGCCCTTGAAAGGTTGAAGGAGATTGCAGAACAAACTGAAAAAACTACAGAAGCTGAATATATTGATCAAATGATCTCTGTTGTAAATTGTATGCATGACCACCTTGTTATGCTTAAGCAATCTCAGAGCTCTATCCCAGAGTCAGTTCCTGCTGATTTTTGTTGTCCTCTCTCTTTGGAGTTGATGACAGATCCAGTGATTGTGGCATCAGGGCAAACCTATGAGCGGGCTTTCATCAAGAACTGGATCGATCTTGGGCTTACTGTTTGTCCAAAGACACGTCAGTCTCTGGTTCGCACCAACCTAATACCTAATTACACTGTAAAGGCATTAATTGCAAACTGGTGTGAATCAAACAATGTGAAGCTTGTTGATCCCATTAAATCCACAAACTTAAATCAACCATCTCTCCTTCGTGGGTCTACGGAGTCTGGTTCATCCAAGGAACTTCCTGTTGCAACACCGAATGGTGGAATCCACCAAGAGGGAACATCATCACTGCATCATCCCCATTCAACTCCAGCAGGTTCCTTGGGTGGCATGGTTAATGGGCAGCATGTGGATCTTGTAAGAATATCACCCACAGGTTCAGATGATGGGTCTTCCAGCGCAGTTGAAGGGAGTATGGATTCAGTTGACCAATCATTAATGTCACCATCCAGAAATGAATCTTCCAATGCCTTGAGCTCCGAACAATGTCAAACCCATATGAGAACTGCTTCTGATTCCACTGCACTCTCTAATGCAAATTTTGCTCAAGGTACACAAGGTGATAACAACAGTGCTCCTCAACTGTCATCCAGTCCAGTCGACAATGAAGATAGTTCTGGGGAATTAAATCAGGGGTCAGATGCTGCTGCCATGCCAACTCCAAATAGAGAACCTGAGTTTTCACCCCAATTGGTGGAGCCAAGGTCTCAAATCCAAACTGTACCGCGACGGTCATTAGAGAGATTTGTTCCAAGGATAGTGTCATCTCCCTCTGTTGAAACAAGAGCTGATCCTTCTGGTACTGAAACCCATGTTCGGAAATTGGTTGAGGACTTGAAAAGCACTTCTCTTGATACTCAGAGGGAGGCAACAGCTGAACTCCGCCTTCTTGCTAAGCACAACACGGATAACCGAATTGTTATTTCAAATTGTGGAGCCATTGCCTTATTAGTTGATTTGCTTCAATCAACTGATACAACAATCCAGGAAAATTCTGTTACAGCACTTCTTAACTTGTCAATCAATGATAACAACAAAACAGCAATTGCAGATGCTGGTGCAATTGGACCTTTGATTCATGTCCTTAAGACGGGGAGCCCAGAAGCCAAGGAGAATTCAGCTGCCACTCTTTTCAGCTTATCAGTTGTTGAGGGAAACAAGATCAAGATAGGGAGGTCAGGTGCAATTGGACCACTGGTTGATTTATTAGGGAACGGAACCCCTAGGGGCAAGAAAGATGCTGCCACTGCTTTGTTTAATTTGTCAATATTTCATGAAAACAAGGACCGGATTGTGCAAGCTGGTGCAATCAAGAACCTTGTAGAGTTAATGGATCCCGCCGCTGGAATGGTTGATAAGGCAGTGGCTGTTTTAGCAAATCTTGCCACAATACCAGAAGGAAGAAGAGCAATTGGTCAGGAAGGTGGGATTCCTGTTCTGGTTGAGGTTGTGGAGTTGGGTTCTGCAAGAGGAAAAGAGAATGCTGCAGCGGCTCTTCTACATCTATGCTCAGACAATCACAGATTCTTAAACATAGTGCTCCAAGAAGGAGCTGTGCCCCCATTAGTAGCATTGTCACAGTCAGGCACCCCAAGGGCCAAAGAAAAGGCCCTGGGTCTCCTTAATCAATTTAGAAGCCAAAGACATGGTGGTGCTGGGAGGGCTTGA 2079 0.4464 VSGLNILQLLKVSQQCLPDDLEPETSSAIKEAIVEQLDGVGPSPEVLTKIAENLSLSSNQEVLIEAVALERLKEIAEQTEKTTEAEYIDQMISVVNCMHDHLVMLKQSQSSIPESVPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTRQSLVRTNLIPNYTVKALIANWCESNNVKLVDPIKSTNLNQPSLLRGSTESGSSKELPVATPNGGIHQEGTSSLHHPHSTPAGSLGGMVNGQHVDLVRISPTGSDDGSSSAVEGSMDSVDQSLMSPSRNESSNALSSEQCQTHMRTASDSTALSNANFAQGTQGDNNSAPQLSSSPVDNEDSSGELNQGSDAAAMPTPNREPEFSPQLVEPRSQIQTVPRRSLERFVPRIVSSPSVETRADPSGTETHVRKLVEDLKSTSLDTQREATAELRLLAKHNTDNRIVISNCGAIALLVDLLQSTDTTIQENSVTALLNLSINDNNKTAIADAGAIGPLIHVLKTGSPEAKENSAATLFSLSVVEGNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIFHENKDRIVQAGAIKNLVELMDPAAGMVDKAVAVLANLATIPEGRRAIGQEGGIPVLVEVVELGSARGKENAAAALLHLCSDNHRFLNIVLQEGAVPPLVALSQSGTPRAKEKALGLLNQFRSQRHGGAGRA 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi186g00002 692 MobiDBLite consensus disorder prediction 199 381 - -
Sebi186g00002 692 PANTHER U BOX DOMAIN-CONTAINING 22 680 - -
Sebi186g00002 692 FunFam RING-type E3 ubiquitin transferase 115 190 - -
Sebi186g00002 692 Pfam Armadillo/beta-catenin-like repeat 479 518 IPR000225 GO:0005515
Sebi186g00002 692 Pfam Armadillo/beta-catenin-like repeat 438 477 IPR000225 GO:0005515
Sebi186g00002 692 Pfam Armadillo/beta-catenin-like repeat 522 559 IPR000225 GO:0005515
Sebi186g00002 692 Pfam U-box domain 116 186 IPR003613 GO:0004842|GO:0016567
Sebi186g00002 692 SMART arm_5 520 560 IPR000225 GO:0005515
Sebi186g00002 692 SMART arm_5 642 683 IPR000225 GO:0005515
Sebi186g00002 692 SMART arm_5 601 641 IPR000225 GO:0005515
Sebi186g00002 692 SMART arm_5 479 519 IPR000225 GO:0005515
Sebi186g00002 692 SMART arm_5 561 600 IPR000225 GO:0005515
Sebi186g00002 692 SMART arm_5 438 478 IPR000225 GO:0005515
Sebi186g00002 692 SUPERFAMILY RING/U-box 105 193 - -
Sebi186g00002 692 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 531 573 IPR000225 GO:0005515
Sebi186g00002 692 SUPERFAMILY ARM repeat 405 681 IPR016024 -
Sebi186g00002 692 MobiDBLite consensus disorder prediction 225 239 - -
Sebi186g00002 692 SMART Ubox_2 119 182 IPR003613 GO:0004842|GO:0016567
Sebi186g00002 692 FunFam RING-type E3 ubiquitin transferase 392 687 - -
Sebi186g00002 692 CDD RING-Ubox_PUB 117 169 IPR045210 -
Sebi186g00002 692 ProSiteProfiles U-box domain profile. 115 189 IPR003613 GO:0004842|GO:0016567
Sebi186g00002 692 MobiDBLite consensus disorder prediction 199 218 - -
Sebi186g00002 692 Gene3D - 393 687 IPR011989 -
Sebi186g00002 692 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 195 IPR013083 -
Sebi186g00002 692 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 449 491 IPR000225 GO:0005515
Sebi186g00002 692 MobiDBLite consensus disorder prediction 262 354 - -
Sebi186g00002 692 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 572 613 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi186g00002 Sebi-Chr186 26736 28911 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi186g00002 75 691 U-box Gene Family AT2G23140 60.125 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi186g00002 - - gmx:100777715 989.178