Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi185g00014 ATGGGTTCGGTTAAAAAGGCTTCCTCTTCAAAACCGAAGTTCAGATTGTTTTACATGGAGTACAATCCTACTGTGAGTTTTCAGCAACTTCCCATGCTTTTCTGCAATGATTTTATTGATGAAGTAGGAAGAAAAGTTATCTTTCGTGATCCTACAAACAATGTCATTCACATGGTTGTTCGTAGAATGGGTAGTACCCTTTACTTTTGTCATGGTTGGACTCTTCTTAAGGACATTTATGATATTGGTGAGGGTGCGTGGCTGAGGTTTTATTTTCAGGATCAAGATGAGTTTCACCTAAAGGTGTATGATAGGGAAATGGCTCAAATTCTATATCCTATTCCACCGAGGGAATATAAGCATAGCCTGACCTTTTTGCCTGAGGACATTATACCTGGGTATGTTCAACAGAATTTTGATAACATTCATTATTCTGAGAAGAAATTGACAAGGTATACTTCTAGTTGTAATGTATTGAATCTTCCCAAGGATCTTTGTCAAAGATTTGTAGGAAACCCAAACCATTGTGTTCTGAGGGATGATGAGGGTGCTAATTTCCCAATTCATTTGTCATGGTCAAAAGATAACAAGTTTGCTTATATTACGAAGGGATGGAAGGAATTCTGCATAGCAAAGGGGTTGAAGGCGGAGCAAGTTCTTCGTCTCAAGATTAATCCACAGGAATCATCAATTATATTTGTTAAGTTAAAGTTTTAA 717 0.3724 MGSVKKASSSKPKFRLFYMEYNPTVSFQQLPMLFCNDFIDEVGRKVIFRDPTNNVIHMVVRRMGSTLYFCHGWTLLKDIYDIGEGAWLRFYFQDQDEFHLKVYDREMAQILYPIPPREYKHSLTFLPEDIIPGYVQQNFDNIHYSEKKLTRYTSSCNVLNLPKDLCQRFVGNPNHCVLRDDEGANFPIHLSWSKDNKFAYITKGWKEFCIAKGLKAEQVLRLKINPQESSIIFVKLKF 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi185g00014 238 SUPERFAMILY DNA-binding pseudobarrel domain 141 224 IPR015300 -
Sebi185g00014 238 SMART B3_2 144 237 IPR003340 GO:0003677
Sebi185g00014 238 CDD B3_DNA 147 223 IPR003340 GO:0003677
Sebi185g00014 238 Gene3D - 5 108 IPR015300 -
Sebi185g00014 238 SUPERFAMILY DNA-binding pseudobarrel domain 8 105 IPR015300 -
Sebi185g00014 238 Gene3D - 135 236 IPR015300 -
Sebi185g00014 238 ProSiteProfiles B3 DNA-binding domain profile. 144 238 IPR003340 GO:0003677
Sebi185g00014 238 Pfam B3 DNA binding domain 149 225 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi185g00014 Sebi-Chr185 629473 630390 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi185g00014 65 233 B3 DNA Binding Superfamily AT4G00260 23.711 4.00e-07 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi185g00014 B3 5.5e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi185g00014 - K08738 tpra:123917148 61.6178