Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi184g00057 ATGTGTGAAAACCGAATAGGGGAGAAGAAGCACGTGCAAAGAATGGATTCAGATCTTCAGCCACATCAACAGATAAATTCCTCTGGTTTGACACGTTACAGATCAGCACCGAGTTCTTATTTCAACAACATCATTGACAGAGAGTTCTACGAGCACATTTTCAATCGACCTTCGAGCCCTGAAACAGAGCGAATTTTCTCGCGGTTTGTCAACAGTTTTGGGGGTGATGGTGATTCAGCAGCAGTAGCAGAAGAACAAGAAGATTCGCTAACTCAAAAAATCTCAGTAGCTGATTGTGGAGTAGTGAAGGAAGAGATTAATAACCAGCATGATCAGGGTATGCATTCCACCATCAATAATGAACAAGTGATTCTACAACAGAGTAACATCAATGATTATAACTCTGCAAATACTGCAAATCATGGATTTTACCAAAGCTCTGCAAGACCACCTTTGCCAAATCAGAATATGGATGGAAATTATTCTTTGGGAGTTAATCGGTTGCAACAGATGAAAACTGGTGGTGGACATAATTCTAATCTTATCAGGCATAGTAGTTCACCTGCAGGACTATTTTCCCAAATCAACATTGAAAATGGGTTTGTTAGTATGAGAGGCATGGGAACTTTAGGAGCTGTGAATAACTCAGTGGAAGATGCAAAATTTTCCACTGCAAGGAGGTTGAAGAATCCATCAAACTACTCATCAGGGAGAATGTCGTCAATAGCTGAAATTGGGGATAAAGGGAATATAGAAAGCAATCAAGACAGTGAAGCTTTTGCTGAAACCAATGGTAATGATTTTATCTCAGGTTTCCCTGTTGGTCCATGGGATGATTCTGCAATTATGTCTGACAACAATGTCAGTGGTCTGAAAAGGTTTAGGGATAATGATGCAAAACCATTTTCTGGTTTAAATGCAGCTGAGACTCAGAATGAAACAGGACAATCTCCTTCTCCTTTGGCTCATCACTTGAGTTTGCCAAATACTTCAGCTGAAATGGCAGCTATTGAGAAGTTTCTTCAATTCTCAGATTCTGTTCCATGCAAAATTCGTGCCAAGCGAGGCTGTGCCACTCACCCAAGAAGCATTGCAGAGAGGGTTAGAAGGACTAAAATTAGTGAGCGTATGAGGAAACTACAAGATCTTGTCCCAAACATGGACAAGCAAACGAACACAGCAGACATGTTGGACTTGGCTGTGGATTACATTAAAGACCTTCAAAAGCAAGTTGAGACGCTTTTAGACTGTCAAGCAAAGTGTACGTGTCCACTCAAGCAACAACAATAA 1290 0.407 MCENRIGEKKHVQRMDSDLQPHQQINSSGLTRYRSAPSSYFNNIIDREFYEHIFNRPSSPETERIFSRFVNSFGGDGDSAAVAEEQEDSLTQKISVADCGVVKEEINNQHDQGMHSTINNEQVILQQSNINDYNSANTANHGFYQSSARPPLPNQNMDGNYSLGVNRLQQMKTGGGHNSNLIRHSSSPAGLFSQINIENGFVSMRGMGTLGAVNNSVEDAKFSTARRLKNPSNYSSGRMSSIAEIGDKGNIESNQDSEAFAETNGNDFISGFPVGPWDDSAIMSDNNVSGLKRFRDNDAKPFSGLNAAETQNETGQSPSPLAHHLSLPNTSAEMAAIEKFLQFSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKDLQKQVETLLDCQAKCTCPLKQQQ 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi184g00057 429 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 94 419 - -
Sebi184g00057 429 Gene3D - 358 429 IPR036638 GO:0046983
Sebi184g00057 429 MobiDBLite consensus disorder prediction 1 17 - -
Sebi184g00057 429 MobiDBLite consensus disorder prediction 300 323 - -
Sebi184g00057 429 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 360 419 IPR036638 GO:0046983
Sebi184g00057 429 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 357 407 IPR011598 GO:0046983
Sebi184g00057 429 MobiDBLite consensus disorder prediction 304 323 - -
Sebi184g00057 429 SMART finulus 363 413 IPR011598 GO:0046983
Sebi184g00057 429 MobiDBLite consensus disorder prediction 1 28 - -
Sebi184g00057 429 FunFam Transcription factor bHLH130 family 358 427 - -
Sebi184g00057 429 Pfam Helix-loop-helix DNA-binding domain 362 408 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi184g00057 Sebi-Chr184 1211561 1213904 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi184g00057 22 423 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 38.028 2.87e-70 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi184g00057 HLH 5.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi184g00057 - - gmx:100805812 561.222