Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi184g00045 ATGGGCTCAATGAACTCAAACAACTGGCTTTCTTTCCCCCTTTCTCCAACTCATTCTTCTTTACCAGCTCATCTCCAAGCAACTCAATCTCATCAGTTTTCTCTTGGGACATTAGTCAATGAGAACATGGAAAGCCCTTTCCAAAATCATGATTGGAATCTGATTAATACTCACAGCAGCAACGAAGTTCCTAAGGTTGCAGATTTTCTTGGTGTGAGCAAGTCTGAGAATCAGTCAGATCTTGCAGCTTTTAATGAAATTCAATCCAATGATTCAGATTATCTCTTCACCAACAACAGTAGCCTATTGCCGATGCAAAACTCTGTGGTGGCTACTAATTCTAGCAGTTATGAGTATCAAGAAAATAGTGCTAACAATAACCTTCAGTCATTGACATTATCCATGGGAAGTGGTAAGGATTCAACATGTGAAACCAGTGGTGATAATAATAGTACTAATACTGTTGAAGCTGCACCTAGAAGAACTTTGGATACCTTTGGGCAGAGAACATCAATATACCGTGGTGTAACAAGACATAGATGGACTGGAAGGTATGAAGCTCACCTTTGGGATAATAGCTGTAGAAGGGAAGGACAATCAAGGAAAGGTCGCCAAGTCTATTTGGGTGGGTATGACAAAGAAGAGAAAGCAGCAAGGGCCTATGATTTAGCTGCACTCAAATACTGGGGGACATCTACCACTACCAACTTTCCCATCAGTAACTATGAAAAGGAATTGGAAGACATGAAGCACATGACTAGACAAGAATTTGTGGCCGCCATAAGAAGGAAGAGCAGTGGATTCTCAAGGGGTGCATCAATGTATCGTGGAGTTACAAGGCATCACCAACATGGAAGATGGCAAGCAAGGATTGGCAGGGTTGCAGGAAACAAAGATCTATATTTAGGAACTTTCAGTAAAAAGAGAGAAGAGATGATAGCACTTGGTTCAAGTTTTCAATATGGAAGCTCAAGCTCAAGTAGGCTACAAGGTTACCCTCTAATGCAGCAACAGTTTGAACAACCTCAACCATTGTTAACACTCCAAAACCAGGACATGTCACAGTATAGCACTACTCATCATGATCACTTTCATCAGAGTTACATCCAAACACAGCTTCAGTTGCACCATCACCAGCAGAGTACTGGAACATACATGCAGCAATCAAATAATAATAGTAGCAGTAACAATGGACAGTTTTATAACAGTTATCTTCAGAACCACCCGGCTTTGCTTCAGGGGTTGATGTCGTCGATGGAAGGTGGAGGGTCAAGTGGGAGTTATAGTGGAGGAGGAGGAGGGTATATGGGGAATAATAATAATAATGGACTTGGAATGGCTTCGAGTTCTTCAAATAATGCAGCAGCAGCATCAGCGGAGGAACTTGCACTTGTTAAGGTTGATTACGACATGCCTTCCGGAGGTTATGGCGGCTGGTCGGCGGCGGACTCCATGCAAGCCTCGAATGGAGCTGGTGTTTTCACAATGTGGAATGAATGA 1500 0.4253 MGSMNSNNWLSFPLSPTHSSLPAHLQATQSHQFSLGTLVNENMESPFQNHDWNLINTHSSNEVPKVADFLGVSKSENQSDLAAFNEIQSNDSDYLFTNNSSLLPMQNSVVATNSSSYEYQENSANNNLQSLTLSMGSGKDSTCETSGDNNSTNTVEAAPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKELEDMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSKKREEMIALGSSFQYGSSSSSRLQGYPLMQQQFEQPQPLLTLQNQDMSQYSTTHHDHFHQSYIQTQLQLHHHQQSTGTYMQQSNNNSSSNNGQFYNSYLQNHPALLQGLMSSMEGGGSSGSYSGGGGGYMGNNNNNGLGMASSSSNNAAAASAEELALVKVDYDMPSGGYGGWSAADSMQASNGAGVFTMWNE 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi184g00045 499 Pfam AP2 domain 172 230 IPR001471 GO:0003700|GO:0006355
Sebi184g00045 499 ProSiteProfiles AP2/ERF domain profile. 274 306 IPR001471 GO:0003700|GO:0006355
Sebi184g00045 499 MobiDBLite consensus disorder prediction 376 400 - -
Sebi184g00045 499 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 64 420 - -
Sebi184g00045 499 ProSiteProfiles AP2/ERF domain profile. 172 238 IPR001471 GO:0003700|GO:0006355
Sebi184g00045 499 SMART rav1_2 172 244 IPR001471 GO:0003700|GO:0006355
Sebi184g00045 499 SMART rav1_2 274 326 IPR001471 GO:0003700|GO:0006355
Sebi184g00045 499 FunFam AP2-like ethylene-responsive transcription factor ANT 171 240 - -
Sebi184g00045 499 PRINTS Ethylene responsive element binding protein signature 220 240 IPR001471 GO:0003700|GO:0006355
Sebi184g00045 499 PRINTS Ethylene responsive element binding protein signature 173 184 IPR001471 GO:0003700|GO:0006355
Sebi184g00045 499 MobiDBLite consensus disorder prediction 136 155 - -
Sebi184g00045 499 SUPERFAMILY DNA-binding domain 171 240 IPR016177 GO:0003677
Sebi184g00045 499 CDD AP2 171 240 IPR001471 GO:0003700|GO:0006355
Sebi184g00045 499 SUPERFAMILY DNA-binding domain 273 310 IPR016177 GO:0003677
Sebi184g00045 499 Gene3D AP2/ERF domain 172 240 IPR036955 GO:0003700|GO:0006355
Sebi184g00045 499 Gene3D AP2/ERF domain 274 314 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi184g00045 Sebi-Chr184 955827 958411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi184g00045 4 499 AP2-EREBP Transcription Factor Family AT1G51190 50.845 3.21e-179 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi184g00045 AP2 8.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi184g00045 K09285 - gmx:100788471 627.861