Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi184g00036 ATGACCGATACCTACTTCTCCAATGGTTATTGGTTTGACCTCAATTCTCCATCACCACCACCTTCCTCTAACCAACCATTCTATTTCCATCATCATCACCACCACACCATCTCTTTCTCTCTTGATCATGAACCTTCTCTTCCTCCTACAAGAGAAGCCCTTCCTCTCCTTAACCTAAGCCCACCTGCAAAACGTGAAGATCTAGAATCTTCCTTTAGTGCCATGGAAGTGATCAACAAGAAGAAGGAGAAAGAAGTAACAAGCATATCAATATCCAACGAGGATGATGCAACAGCTGTGACGGTGGCTTTGCACTTAGGGCTTCCAACCATAACTTCAGCTGATTTAGCTTCAAATTTATACTCTTCCACGGAGATCTCAGATGATAAAGAAGAAAAAGCAGTGATGATGAGTACTACTACTATTGTTGCTAGTTCTGAGAGTGAGTATCCATCATCAAATAGTAGAATTAATAGGGGTCAGTATTGGATCCCTACCCCTTCTCAGATTCTGATTGGTCCAACACAGTTTTCATGCCCCCTTTGTTTCAAGACCTTCAATAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATATAGAAAGGGGCCAGAGTCTCTAAGGGGAACACAACCAACAGCTATGCTAAGACTCCCATGTTATTGCTGTGCACCAGGATGCAAGAACAACATTGACCATCCAAGAGCAAAACCATTGAAGGACTTTAGAACCCTTCAAACACATTATAAGAGGAAGCATGGAATCAAGCCATTCATGTGTAGGAAGTGTTGCAAAGCATTTGCTGTGAGAGGTGATTGGAGGACTCATGAGAAGAATTGTGGGAAGCTTTGGTATTGTTCTTGTGGGTCCGATTTTAAGCATAAAAGGTCGCTTAAGGATCATATCAAGGCATTTGGAAATGGACATAAAGCTTATGGAATTGACGACTGTCTTGATCAAGATGATGAAGGAGGCTCTGAAATTGAGCAAGATAATGAATCTTGCCAGTTATAG 1023 0.4184 MTDTYFSNGYWFDLNSPSPPPSSNQPFYFHHHHHHTISFSLDHEPSLPPTREALPLLNLSPPAKREDLESSFSAMEVINKKKEKEVTSISISNEDDATAVTVALHLGLPTITSADLASNLYSSTEISDDKEEKAVMMSTTTIVASSESEYPSSNSRINRGQYWIPTPSQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGNGHKAYGIDDCLDQDDEGGSEIEQDNESCQL 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi184g00036 340 ProSitePatterns Zinc finger C2H2 type domain signature. 179 199 IPR013087 -
Sebi184g00036 340 Gene3D Classic Zinc Finger 217 309 - -
Sebi184g00036 340 PANTHER ZINC FINGER PROTEIN WIP2 31 336 IPR043584 GO:0003700|GO:0010468
Sebi184g00036 340 ProSiteProfiles Zinc finger C2H2 type domain profile. 177 204 IPR013087 -
Sebi184g00036 340 SUPERFAMILY beta-beta-alpha zinc fingers 243 281 IPR036236 -
Sebi184g00036 340 FunFam Zinc finger protein WIP2 230 312 - -
Sebi184g00036 340 Gene3D Classic Zinc Finger 176 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi184g00036 Sebi-Chr184 779899 782115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi184g00036 51 339 C2H2 Transcription Factor Family AT3G57670 61.392 1.80e-130 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi184g00036 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi184g00036 - - gmx:100789416 493.426