Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi184g00031 ATGGCAACGGCGTCTTCGCAGGCGCAGGGTGGTTATCATCAACCTTCCTCCATCGAGGAAGTTCGAACCCTTTGGATTGGGGATTTGCAGTATTGGGTCGATGAAACCTATCTCAGTCACTGCTTCGCTCACACCGGCGAGGTAGTTTCAATCAAAATCATACGCAACAAGATGACTGGGCAACCAGAGGGTTACGGTTTCGTTGAGTTTGTTTCTCACGCTGCAGCAGAAAGGGTTCTTCAGAGTTACAATGGGACCCAAATGCCCGGAACCGAACAAACTTTTCGGTTGAATTGGGCTTCTTTCGGTATTGGGGAACGTCGTCCCGATGCGGGTCCTGAACACTCCATCTTCGTGGGTGATCTTGCTCCTGATGTTACCGATTATCTTCTTCAGGAGACTTTTCGTGCTCATTACCCTTCCGTTCGGGGTGCTAAGGTTGTCACTGACCCTAACACTGGCCGCTCCAAGGGTTATGGTTTTGTTAAATTTTCTGATGAGAATGAAAGGAACCGTGCCATGACCGAAATGAATGGTGTTTATTGCTCCACTAGGCCTATGCGCATTAGTGCTGCTACTCCTAAGAAGACTAATGCTTTTCAACACCCATATGCTGCACCTGCTCCTAAAGCAATATATCCCATCCCGGCGTACACTACCCCAGTGAATACAGTTCCACCAGATTATGATGTAAATAATACTACTCTTTTTGTTGGTAATTTGGATCTTAATGTCTCAGAAGAGGAGCTGAAGCAAAACTTTATGCAATTTGGAGAAATTGTCTCTTGCAAAATTCAGGCTGGCAAAGGATGTGGTTTTATTCAATTTGGGATCAGAGCATCTGCTGAAGAAGCCATTCAGAAGATGCAGGGAAAGATGATAGGTCAACAAGTGATCCGAGTTTCTTGGGGTAGGACCCCAACAGCTAGACAGGACTTAGCTGGTGGCTGGGGACCACAGATGGATCCAAGTCAATGGAGTGCCTACTATGGGTATGGACAGGGTTATGAAGCCTATGCTTATGGGGCCACTCAGGATCCTTCAATGTATGCATATGCTGCATATGCTGGCTATGCACAATATCCCCAACAGGTTGAAGGTGCTCAAGACGCATCAGCTTTGTGTGTACCTACCATGGAACAAAGGGAGGAGTTGTATGATCCCCTGGCAATGCCAGATGTTGATAAGTTAAATGCTGCATATCTCTCAGTACATGGAAGTGCCATTTTAGGGCGGTCCCTCTGGCACAAAACCTATTCTTCATCCTTACAGCAAGCATAG 1281 0.4668 MATASSQAQGGYHQPSSIEEVRTLWIGDLQYWVDETYLSHCFAHTGEVVSIKIIRNKMTGQPEGYGFVEFVSHAAAERVLQSYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAHYPSVRGAKVVTDPNTGRSKGYGFVKFSDENERNRAMTEMNGVYCSTRPMRISAATPKKTNAFQHPYAAPAPKAIYPIPAYTTPVNTVPPDYDVNNTTLFVGNLDLNVSEEELKQNFMQFGEIVSCKIQAGKGCGFIQFGIRASAEEAIQKMQGKMIGQQVIRVSWGRTPTARQDLAGGWGPQMDPSQWSAYYGYGQGYEAYAYGATQDPSMYAYAAYAGYAQYPQQVEGAQDASALCVPTMEQREELYDPLAMPDVDKLNAAYLSVHGSAILGRSLWHKTYSSSLQQA 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi184g00031 426 CDD RRM1_SECp43_like 23 103 - -
Sebi184g00031 426 Gene3D - 21 101 IPR012677 -
Sebi184g00031 426 SMART rrm1_1 23 98 IPR000504 GO:0003723
Sebi184g00031 426 SMART rrm1_1 116 190 IPR000504 GO:0003723
Sebi184g00031 426 SMART rrm1_1 235 302 IPR000504 GO:0003723
Sebi184g00031 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 234 306 IPR000504 GO:0003723
Sebi184g00031 426 SUPERFAMILY RNA-binding domain, RBD 21 197 IPR035979 GO:0003676
Sebi184g00031 426 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 15 310 - -
Sebi184g00031 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 236 300 IPR000504 GO:0003723
Sebi184g00031 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 182 IPR000504 GO:0003723
Sebi184g00031 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 24 92 IPR000504 GO:0003723
Sebi184g00031 426 FunFam polyadenylate-binding protein RBP45 217 314 - -
Sebi184g00031 426 FunFam Polyadenylate-binding protein RBP47B 21 101 - -
Sebi184g00031 426 SUPERFAMILY RNA-binding domain, RBD 214 335 IPR035979 GO:0003676
Sebi184g00031 426 CDD RRM2_SECp43_like 114 193 - -
Sebi184g00031 426 Gene3D - 221 312 IPR012677 -
Sebi184g00031 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 194 IPR000504 GO:0003723
Sebi184g00031 426 Gene3D - 104 202 IPR012677 -
Sebi184g00031 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 22 102 IPR000504 GO:0003723
Sebi184g00031 426 FunFam Polyadenylate-binding protein RBP47B 103 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi184g00031 Sebi-Chr184 602521 606821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi184g00031 21 324 Eukaryotic Initiation Factors Gene Family AT2G23350 27.885 1.84e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi184g00031 - - tpra:123894020 729.169