Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi184g00030 ATGGCTGCAACTCCTACCAAGTCTTTCCAATCTCCCTCAAAACCCTACCTCCGATCGCAATCCAATGCGAAATCCACACCCGCTGTAACTCCCGTCACACCTCAATCCCTACCTCTTCGCAGATCCACGCGCTCAAAGTCCCTCCACTTTGATTCTCCCAAACCTCCCCATGAATCTTGCGAAAATCAACTCGGAACTCCGAAAAACAGGAGAGCCAGGGAGAATCTCGATCAACCCAGGTCTCGTCGATCCATTGATTACACAAAGGATTCTGACAAAGATAAAGTCATAACCCGCACAAGTGCAACTAGAGGAAATGGAAATGCTTCTGTTGAAGCATCAAAGAAGAGAAATGGGAAGGGGTCAGTTGAAGTTTCCTTTGCTCCAGCATCGCCCGATCAATCGGAAACTAAGAAGAGGAAGAGGGAGGGTGAGAGAACGGTTGTTACTAGAGCTTTGGCTGCGAAAAAAGGGAAATCGGAGAATAGGCAAAAGATTGTGGAGCTGCCAAAGCGCCGTACTCATTATAAAAAAGTGGTTTATGACGGGGGCGAGTTTGAAGTGGGGGATGCTGTTTATGTGAAGAGGAGAGAAGATGCTACTTCTGATGATGAAGATCCCGAAGTGGAGGAGTGTAGGTTGTGTTTTTGTTCTGGCAATGAGATCATGATTGAGTGTGACGAATGTTTAGGTGGGTTTCATTTGAAATGCTTGAAGCCGCCGTTGAAGGACGTTCCTGAAGGGGATTGGATATGTGGGTTCTGTGAGGCTCGTAAGATGGGTAGGGAAGTTAATTTTCCAAAGCCTCCACAGGGTAAGAATTTAGTTAGGACAATGAGGCAGAAGCTTTTATCCAGTGATTTGTGGGCTGCTCATATTGAGAGATGGCTTGAGTTCTCTTTAAAATACTCAATTCAAATGGAATCTGTCCTTAGACACTGCTATGTCATGACCCCCAAAGAATATGCTAAAGCAAAAGATGAGGGAGATGATATATTCTTCTGTGAATATGAATATGACATCCACTGGCACAGTTTCAAACGTCTTGCTGATATTGATAATGAAAGAGAGAATGGTGGAGAGACTGACAGTGATGAAGACTGGAATGTTGACAAGGAATCAGACTCTGATACTGATGAAGATGTTGAATATGAAGAGGAAAATATTAAAAATGCACAATCTCAACCATCAACAAGCCATCAGTTAGCTGCAAATCTGCACAAGGGGCGGTTCTTTGGACTTCAGAAGATAGGCACAAAAAGAATTCCACAGCATATAAGGTCTCACAAACAGACTGATCTTGAGAGAGCAAAGGCTACACTGTTGTTAGCATCACTGCCTAAATCTTTACCTTGTAGAAATAAAGAAATGGAGGAGATAACTACATTTATTAAAGATGCTATTTCTGATGATCAATGTTTGGGACGTTGCCTCTACATTCATGGTGTTCCCGGAACTGGCAAGACAATGAGTGTATTATCAGTAATGAGGAGTTTGAGGTCAGAAGTTGATGCAGGAAACATCAAACCCTACTGTTTTGTGGAGATTAATGGTCTGAAATTGGCATCACCAGAGAATATTTATAGGGTCATATATGAGGCATTAAATGGACACAGGGTCAGCTGGAAAAAGGCTCTCCACCTGCTAAATGAGAGGTTTGTAGAAGGGAAGAAAACTGGAGAAGAGGCTGACAGGCCATGTATTTTGCTAATTGATGAACTTGATCTTCTTGTGACCAGAAACCAGTCGGTTTTGTACAATATTCTTGATTGGCCTACTAAGCCACATTCCAAGCTAATTGTGATAGGCATAGCAAATACTATGGATCTTCCAGAGAAGTTACTTCCTCGTATATCAAGCCGAATGGGTATACAGAGGCTTTGCTTTAGCCCATATAATCATCAGCAGCTTCAAGAAATCATTTCGAGTCGCCTCAAGGGAATTGATGTATTTGAAAAGCAAGCTATTGAATTTGCTTCAAGAAAGGTTGCAGCAATCTCAGGAGATGCACGTCGTGCTCTGGAGATATGCAGACGTGCAGCTGAAATAGCAGATTATCGTATGAAGGAGCTAACTTCAAATACTGATTTTGTTGCTGCAGGAAAGGGACTTGTTGGTTTGGCAGACGTTGAAGCAGCCATACAAGAAATGTTCCAAGCACCTCATATTCAAGTTATGAAAAACTGTTCCAGACTTAGCAAAATTTTCCTGACGGCTATGGTGCACGAGCTTTATAAAACAGGAATGGGAGAAACCACTTTTGAAAAGTTGGCAATGACGGTTTCAGCTCTGTGTACCAGCAACGGAGAAGTTTTTCCTGGATATGATACCCTGCTGCAAGTTGGCTGTAAGCTAGGCGAATGCAGGGTTATTTTATGTGAAGCAGGTGCCAAGCACAGGTTGCAAAAATTGCAGCTTAATTTCCCGAGGTTAGTTCTCAAAGCTCATATCAGCTTTTCAATTGCTTCTATAGAAATAAATGATGGGATTATGACCGAGTAG 2502 0.4253 MAATPTKSFQSPSKPYLRSQSNAKSTPAVTPVTPQSLPLRRSTRSKSLHFDSPKPPHESCENQLGTPKNRRARENLDQPRSRRSIDYTKDSDKDKVITRTSATRGNGNASVEASKKRNGKGSVEVSFAPASPDQSETKKRKREGERTVVTRALAAKKGKSENRQKIVELPKRRTHYKKVVYDGGEFEVGDAVYVKRREDATSDDEDPEVEECRLCFCSGNEIMIECDECLGGFHLKCLKPPLKDVPEGDWICGFCEARKMGREVNFPKPPQGKNLVRTMRQKLLSSDLWAAHIERWLEFSLKYSIQMESVLRHCYVMTPKEYAKAKDEGDDIFFCEYEYDIHWHSFKRLADIDNERENGGETDSDEDWNVDKESDSDTDEDVEYEEENIKNAQSQPSTSHQLAANLHKGRFFGLQKIGTKRIPQHIRSHKQTDLERAKATLLLASLPKSLPCRNKEMEEITTFIKDAISDDQCLGRCLYIHGVPGTGKTMSVLSVMRSLRSEVDAGNIKPYCFVEINGLKLASPENIYRVIYEALNGHRVSWKKALHLLNERFVEGKKTGEEADRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISSRMGIQRLCFSPYNHQQLQEIISSRLKGIDVFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRMKELTSNTDFVAAGKGLVGLADVEAAIQEMFQAPHIQVMKNCSRLSKIFLTAMVHELYKTGMGETTFEKLAMTVSALCTSNGEVFPGYDTLLQVGCKLGECRVILCEAGAKHRLQKLQLNFPRLVLKAHISFSIASIEINDGIMTE 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi184g00030 833 MobiDBLite consensus disorder prediction 358 386 - -
Sebi184g00030 833 ProSiteProfiles BAH domain profile. 184 350 IPR001025 GO:0003682
Sebi184g00030 833 SUPERFAMILY FYVE/PHD zinc finger 200 261 IPR011011 -
Sebi184g00030 833 MobiDBLite consensus disorder prediction 355 398 - -
Sebi184g00030 833 Pfam AAA lid domain 652 685 IPR041083 -
Sebi184g00030 833 Gene3D - 430 626 IPR027417 -
Sebi184g00030 833 SMART AAA_5 474 628 IPR003593 GO:0016887
Sebi184g00030 833 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 444 687 IPR027417 -
Sebi184g00030 833 MobiDBLite consensus disorder prediction 1 43 - -
Sebi184g00030 833 MobiDBLite consensus disorder prediction 1 146 - -
Sebi184g00030 833 ProSitePatterns Zinc finger PHD-type signature. 212 255 IPR019786 -
Sebi184g00030 833 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 207 268 IPR013083 -
Sebi184g00030 833 FunFam Origin recognition complex subunit 1 431 630 - -
Sebi184g00030 833 FunFam Origin recognition complex subunit 1 207 274 - -
Sebi184g00030 833 MobiDBLite consensus disorder prediction 67 99 - -
Sebi184g00030 833 Pfam PHD-finger 215 257 IPR019787 -
Sebi184g00030 833 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 304 810 - -
Sebi184g00030 833 MobiDBLite consensus disorder prediction 100 115 - -
Sebi184g00030 833 SMART PHD_3 214 256 IPR001965 -
Sebi184g00030 833 Pfam ATPase family associated with various cellular activities (AAA) 479 624 IPR003959 GO:0005524|GO:0016887
Sebi184g00030 833 Gene3D - 627 701 - -
Sebi184g00030 833 ProSiteProfiles Zinc finger PHD-type profile. 209 258 IPR019787 -
Sebi184g00030 833 Gene3D - 293 376 IPR043151 -
Sebi184g00030 833 Gene3D - 123 206 IPR043151 -
Sebi184g00030 833 FunFam Origin recognition complex subunit 1 627 719 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi184g00030 Sebi-Chr184 593966 600113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi184g00030 4 809 Core DNA Replication Machinery Family AT4G14700 58.049 0.0 912
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sebi184g00030 AAA 8.3e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi184g00030 K02603 - gmx:100798547 1296.18