Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi184g00020 ATGGTGAAGGACAAGCAAGGCACCTACGCCCCTAAACAAAACAAAGTCGTCGTCCTTTGGGACCTCGATAACAAACCCCCACGTGGCCCACCCTACAACGCCGCTCTCTCTCTCAAAACCCTCGCTCAACACTTCGGCGACGTCGTAGACATCTCCGCCTACGCCAACCGCCACGCCTTCATCCATCTCCCTCAATGGGTCCTCGACCAACGCCGTGAACGCAAAAACCTCGACATCCTCGAGCGCAAGGGCGTCGTCACACCTTCCGAGCCTTACGTCTGCAACGTCTGTGGCCGCAAATGCAAGACCAACTTCGACCTCAAGAAGCACTTCAAGCAGCTCCACCAGCGCGAGCGTCAGAAGAAGCTGAACCGGTTGAACTCCCTTAAGGGGAAGAAGCGACAACGCTATAAGGAGCGGTTCATTCGTGGGAACCATAAGTACAATGAGGCTGCTAGGGCTCTTGTTACGCCTAAGGTTGGGTATGGTCTTGCTTCGGAGTTGCGGCGTGCTGGGGTTTTTGTGAAGACGGTGGAGGATAAGCCTCAGGCTGCGGATTGGGCGTTGAAGAGGCAGATGCAACACTCGATGAGTAGAGGGATTGATTGGTTGTTTCTGGTTTCGGATGATTCGGATTTCTCCGAGATGTTGAGGAGGGCGAGGGAGGCCAATTTGGGGACTGTGGTTGTTGGGGATATGGATAGGGCGTTGGGGCGGCATGCTGATTTGTGGGTTCCTTGGCTTGCGGTTGAGAATGGAGAGATTTCGGAGAAAGATTTGGTGCCCAAGAACAGAGGGAGGAGAGAGGATTTGGATGGGTTGTTTTTGAATGAGGATGAGGAATTGGAAGAGGATTTTATCAGCTTGGACTTCGATGGTTTCAATGCTGTTGTTGTGAAATGA 903 0.5293 MVKDKQGTYAPKQNKVVVLWDLDNKPPRGPPYNAALSLKTLAQHFGDVVDISAYANRHAFIHLPQWVLDQRRERKNLDILERKGVVTPSEPYVCNVCGRKCKTNFDLKKHFKQLHQRERQKKLNRLNSLKGKKRQRYKERFIRGNHKYNEAARALVTPKVGYGLASELRRAGVFVKTVEDKPQAADWALKRQMQHSMSRGIDWLFLVSDDSDFSEMLRRAREANLGTVVVGDMDRALGRHADLWVPWLAVENGEISEKDLVPKNRGRREDLDGLFLNEDEELEEDFISLDFDGFNAVVVK 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi184g00020 300 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 120 IPR013087 -
Sebi184g00020 300 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 4 284 - -
Sebi184g00020 300 Gene3D Classic Zinc Finger 66 141 - -
Sebi184g00020 300 SMART c2h2final6 92 115 IPR013087 -
Sebi184g00020 300 CDD PIN_LabA-like 102 232 - -
Sebi184g00020 300 Coils Coil 112 132 - -
Sebi184g00020 300 SUPERFAMILY beta-beta-alpha zinc fingers 85 120 IPR036236 -
Sebi184g00020 300 ProSitePatterns Zinc finger C2H2 type domain signature. 94 115 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi184g00020 Sebi-Chr184 333739 334810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi184g00020 1 294 C2H2 Transcription Factor Family AT5G52010 70.066 2.80e-160 450
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi184g00020 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi184g00020 - - zju:107419957 488.419