Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi184g00011 ATGGGAGCTTGTTGCTCTAAATTCTGTATATGCTGGTGGCCTTCCAATACCCAATCAAATCTTCAAGACTTGCCTGATAATGAAGATGGGAACAAGGGTGAGGAGAAAGGTGCTGGCTTTACTGAGTACAGCTTGGACCAATTGAGAACTGCGACCTCAGGATTTTCACCTGATAACATTGTCTCGGAACACGGTGAAAAGGCTCCCAATGTTGTCTACAAAGGAAGGGTTGAAGATGATAGGTTGGTTGCTGTGAAGCGTTTCAACAAGTCTGCTTGGCCTGATCCTCGGCAGTTCCTAGTTTGTGTTCCTCTAACTATTGTTTTCCTTTGCATTTTGCATGAGGAAGCAAGAGCAGTGGGGCAGCTGCGGAATGAGAGGTACCTAAGCTTTTATGACCAGGATGGCAACCCTAGACTCTCTTGTTTTGGACTAATGAAAAACAGCAGAGATGGTAGAAGCTACAGTACAAATTTAGCCTTCACCCCTCCTGAGTATTTGAGGACAGGAAGAATCATCCCAGAAAGTGTAATTTACAGTTTCGGAACACTTCTGCTTGATCTTCTGAGTGGCAAGCATATCCCACCCAGTCATGCACTTGACCTTATTCGAGGCAAAAATTTTCAGTTGCTTATGGACTCGTGTTTGGAAGGTCATTTTTCAGATGATGATGGAACTGAGTTAGTGAGATTAGCTACACGTTGTTTGCAGTATGAACCTCGTGAGAGGCCAAATGCCAAGTCACTTGTGACTGCTCTAACTCCTCTTCAGAAAGAAACTTCTGTTCCATCACTTGTTTTATTGGGCATACCGGATGAGAGTGCGTCATCAAAGGAAACAATTTCACTAACACTATTTGGTGAAGCTTGTTCACAAAGAGATCTTAATTCAATACATGAAATTTTGGAAAGAGCAGGGTACAAGGATGATGAAGATGTTGCAAATGAGCTTTCCTTCCAAATGTGGACAGATCAAATACAAGAAACACTGAATTCAAAGAAGCATGGAGATTCTGCTTTTCATGCCAGGGACTACTCTAGGGCCATTGACTTCTATACTCAATTCATCGATGGTGGGACCATGGTATCACCAACTGTGTTTGCAAGGCGGTGCTTATGTTATCTGATGAACAACATGGCACAAGAAGCACTAGGAGATGCCATGCAAGCTCAATCAGTATCTCCCACCTGGCCTACTGCATTCTATCTCCAAGCAGTAGCTCTCTTCAGCCTTGGGATGGACATTGATGCACAGGAAAGTCTTAAAGACGGCACAACACTGGAAACCAGAAAGCATACAAATTGA 1305 0.4345 MGACCSKFCICWWPSNTQSNLQDLPDNEDGNKGEEKGAGFTEYSLDQLRTATSGFSPDNIVSEHGEKAPNVVYKGRVEDDRLVAVKRFNKSAWPDPRQFLVCVPLTIVFLCILHEEARAVGQLRNERYLSFYDQDGNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRIIPESVIYSFGTLLLDLLSGKHIPPSHALDLIRGKNFQLLMDSCLEGHFSDDDGTELVRLATRCLQYEPRERPNAKSLVTALTPLQKETSVPSLVLLGIPDESASSKETISLTLFGEACSQRDLNSIHEILERAGYKDDEDVANELSFQMWTDQIQETLNSKKHGDSAFHARDYSRAIDFYTQFIDGGTMVSPTVFARRCLCYLMNNMAQEALGDAMQAQSVSPTWPTAFYLQAVALFSLGMDIDAQESLKDGTTLETRKHTN 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi184g00011 434 SUPERFAMILY TPR-like 331 430 IPR011990 GO:0005515
Sebi184g00011 434 Gene3D Transferase(Phosphotransferase) domain 1 107 270 - -
Sebi184g00011 434 Gene3D Tetratricopeptide repeat domain 327 434 IPR011990 GO:0005515
Sebi184g00011 434 ProSiteProfiles Protein kinase domain profile. 1 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi184g00011 434 Gene3D Phosphorylase Kinase; domain 1 26 106 - -
Sebi184g00011 434 FunFam probable serine/threonine-protein kinase At4g35230 327 434 - -
Sebi184g00011 434 SUPERFAMILY Protein kinase-like (PK-like) 60 263 IPR011009 -
Sebi184g00011 434 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 130 432 IPR045845 GO:0004672|GO:0009742
Sebi184g00011 434 Pfam Protein tyrosine and serine/threonine kinase 139 253 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi184g00011 Sebi-Chr184 220407 224173 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi184g00011 37 253 Trihelix Transcription Factor Family AT1G70460 22.712 4.79e-13 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Sebi184g00011 PK_Tyr_Ser-Thr 1.1e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi184g00011 - - msin:131252679 616.305