Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi183g00034 ATGCACGTGTGGGGTTTAGAGATATGGAAGTGGTGTTTGATGGTAATGGTCACATTCAGTGGCCGTTTGGTGTCAGGGTGGTTAGTTAGCGTAACCGTTTTCATCATCGAGCGAAACTTCATGCTAAGAGAGAAGGTCTTATACTTCATCTACGGCCTCAGAAAGAGCATAAGAAACTGTTTATGGTTAGGCCTCGTTCTTCTCTCCTATTGGAGCGTCGTCTTCGACGACGTGCAGAAGAAAAACCACAAGTTCCTCAACAAACTATTTCAAGCACTTGTGGCTGTGTTAGTAGGTGCTACCATATGGTTAGTGAAGATCGTGCTGGTGAAGGTGTTAGCCTCGTCTTTTCATGTAACAACTTATTTTGACAGAATGAAAGAGAGCGTTTTCCATCACTACATATTGGACACGCTTTCAGGTCCACCCATGGATGCTGAGCAAATGCTGTTGCAAGAGCACCACCTGAGTGGGTCCAAGTCGATGCCTGCGAGGTGGAAGGAAGGGAGGAAGTTGAAGGATGCTAATAATTTGTATAAGTCGAAGAGATTTGGGTCGAGGAAGATTGATATGGAGAAGCTGAGAGAGCTTAGCATGGAGAGCACTGCATCTGCTTGGAGTGTGAAGAGGCTTGTTAATTATGTTAGGTCTTCTGGATTGTCCACGATTTCAAGGACTGTGGATGATTTTGGGAGTGCTGAGTCTGAGATTAGCAGTGAGTGGGAAGCTAGAAATTGTGCTCAGAGGATTTTCAAGAATGTTGCCAAACCTGGTGCCAAGTATATTGAAGAGGAGGATCTCACCAGATTTTTGAAGAGGGTTGAGATACATACCATATTTCCACTCTTTGAAGGTGCTCTTGAAACTGGGAAGATTAGTAGGTCTTCATTTAGAAATTGGGTGATTCGAGCTTATTATGAACGAAAAGCTCTAGCACAATCACTCAATGATACCAAAACAGCAGTGCAGCAGCTTCACAAGCTAGCAAGCGCGGTTGTGAGTGTGATAATAATCATTGTGGTCCTTTTGGTGATGGGGGTGGCTACAATGAAGATAATATTATTCTGCATTACACAAACCGTTTTAATAGGGGTTGCCTTCCAAGGTACTTGCAAGACAGTCTTGGAGGCTATCATCTTTGTCTTTGTCATGCACCCTTTTGATATTGGTGATCGCTGCGTCATTGATGGTGTTCAGATGACTGTGGAAGAGATGAATATCTTGACAACAGTGTTTCTTCGACATGACAATGAGAAAATATATTACCCAAATGCAGTTTTGCTTTCTAAGCCAATAAGCAACTTCTATAGGAGTCCAGAGATGTGGGATTCAATTGATTTCACCATTGACGTGACAACTCCCATGGAGACTATCATTGCACTCAAGAAATCAATACAAATGTACATTGAGAGCAAGCCAAAGTATTGGAATCCAAAGCACAGTGTGATTGCAAAACAAATAGAAAATGTGGACAAGTTGAAGCTGTGCTTATGTGTGCAACACACCATCAACCATCAGAACTACGGGGAACGAAACATTAGGATAACGGAGCTCCTCTTGGAATTGAAAAAGATATTTGAGATCCATGGCGTCAAGTACCATCTTCTTCCTCAAGAGATCCACCTTACCCAGATGAACCTTGAAAATGGGAGAGTTTTGTTTCAATCATGA 1671 0.4255 MHVWGLEIWKWCLMVMVTFSGRLVSGWLVSVTVFIIERNFMLREKVLYFIYGLRKSIRNCLWLGLVLLSYWSVVFDDVQKKNHKFLNKLFQALVAVLVGATIWLVKIVLVKVLASSFHVTTYFDRMKESVFHHYILDTLSGPPMDAEQMLLQEHHLSGSKSMPARWKEGRKLKDANNLYKSKRFGSRKIDMEKLRELSMESTASAWSVKRLVNYVRSSGLSTISRTVDDFGSAESEISSEWEARNCAQRIFKNVAKPGAKYIEEEDLTRFLKRVEIHTIFPLFEGALETGKISRSSFRNWVIRAYYERKALAQSLNDTKTAVQQLHKLASAVVSVIIIIVVLLVMGVATMKIILFCITQTVLIGVAFQGTCKTVLEAIIFVFVMHPFDIGDRCVIDGVQMTVEEMNILTTVFLRHDNEKIYYPNAVLLSKPISNFYRSPEMWDSIDFTIDVTTPMETIIALKKSIQMYIESKPKYWNPKHSVIAKQIENVDKLKLCLCVQHTINHQNYGERNIRITELLLELKKIFEIHGVKYHLLPQEIHLTQMNLENGRVLFQS 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi183g00034 556 SUPERFAMILY Sm-like ribonucleoproteins 377 435 IPR010920 -
Sebi183g00034 556 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 2 546 IPR016688 -
Sebi183g00034 556 Gene3D - 386 435 IPR023408 -
Sebi183g00034 556 FunFam Predicted mechanosensitive ion channel 386 435 - -
Sebi183g00034 556 Pfam Mechanosensitive ion channel 327 532 IPR006685 GO:0016020|GO:0055085
Sebi183g00034 556 PIRSF Memb_At2g17000 1 555 IPR016688 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi183g00034 Sebi-Chr183 929305 935691 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi183g00034 4 546 Mechanosensitive Ion Channel Family AT5G12080 48.370 0.0 534
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi183g00034 K22048 - gmx:100813521 945.651