Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi183g00020 ATGGAGTCGAGTGGGAACGAGTGTTTGACGGTTCGAGAGGTATGTGCAAATGGAAGCTGCATAAAAACATCAGAACTTGAGGCCAAGCTTGATGAAGGAAATATTCAAGAAGCAGAAGCAGCATTGCGAGAAGGATTGTCGATCAATTCTGAGGAAGCAAGAGCTCTTCTTGGAAAATTAGAGTATCAGAGAGGTAATGTTGAAGGTGCTCTTCATGTGTTTGATGGTATTGATCTTCAAGCAGCTATACAGCGACTGCAAACTTCCCTTTCTGAGAAGCCACCCATCAAGAAGGGTCCCGCTCGTACTGAATCACCTACCTCAGTCTCTCAGCATGCTGCTAAAGCTGCTAATGAATGCAAGCATGTTCTTGATGCTGTTGAGAAGATATTTTGTCAGGGTATACCTGATACTCAAGTGGACAATAAATTGCAGGAAATAGTCAGCCATGCAGTGGAGCTCCTTCCAGAGCTTTGGAAACAGGCTGGTTGCTATTCTGAGGCAATTTCTGCTTATAGGCAAGCCCTTCTTAGTCAATGGAACCTTGATAATGATTGCTGTGCAAGAATTCAGAAAGCATTTGCTGTATTTTTGCTATACAGTGGGGTGGAGGCAAGTCCGCCTAGTTTAGCAGTTCAGATTGAAGGGTCTTATGTACCTAAAAATAATTTGGAAGAGGCAATTCTTCTTCTTATGATTCTTTTGAGGAAGTTTAGCCTAGCATGTGGCCAAACTTCTCTTTTAGCAAAGCAACTTGAAGAGTTGATGCCTGGTGTATATCACCGTATTGACCGTTGGAATTCTTTAGCTCTATGTTATAGTGGAGCTGGACAAGACAAAAGTGCTTTGAATCTTCTAAGGAAGTCTGTGCACAAACATGAGCGACCAGATGACCTTATATCATTATTATTGGCTGCTAAGATTTGCAGTGAGGATCCTCATCTTGCTGCTGAGGGAGCAGGATATGCACAGAGGGCAATCGATAATGCTCAGGGCTTACATGATCATTTGAAAGGTGCGGGTCTTAGGATGCTGGGACTTTGCCTGGGAAAGCAAGCTAAGGTTGCTTCCTCTGACTTCGAGAGGTCTATGCTTCAGTCAAAAGCTTTGCAATCATTGGAGGAGGCCGTTAGATTAGAGCAAAACAATTCTGATCTAATTTTTGAATTGGCTCTTCAATATGCTGAGCACCGAAATTTGGCTGCTGCCTTACGCTGTGCTAAACAGTTCTTTGACAAAACTGGTGGCTCTAAACTAAAAGGTTGGAGATTGCTTGCTCTGGTTTTGTCTGCACAGAAAAGATTTTCAGAGGCTGAAGTGGTGACTGATGCTGCTTTAGATGAGACTGCAAAATGGGAGCAGGGGCCACTGTTCAGGCTAAAAGCCAAGCTGAAGATCTCCCAATTACGACCAATGGATGCTATTGAGATTTACCGGTACCTTCTTGCTTTGGTTCAAGCCCAGAGGAAATCCTCTGGACCTCTAAGACTTAGTTCACAGGCTGAGGACGATAAAATAAGTGAATTTGATGTTTGGCATGGTCTGGCAAATTTATATGCAAGCCTTTCTCATTGGAAGGATGCTGAAATCTGTTTGCAGAAGGCCAGAGAGTTGAAGGAATACTCAGGAGCGACAGTACACACTGAAGGCAAGAACAAAACCTTTATGCTGTTAAAAGTTTTATACTTTAGCATATTCAACTTATGTGTTATGTTTGAAGGCCGTGGACAGAACCCAGAAGCCCTTGCTGCTGCTGCTACAGCTGTCCTATTTGAACCAAACCATGCTCCAAGCAAGATCTTGATGGGTTCTTTGACGCTGAAAATGGGTCCTAAAGCTTTGCCTGTTGCTAGAAGCTTACTTTCTGATGCACTTAGATTGGAACCCACTAACCGCATGGCTTGGTATAACTTGGGATTAACTCACAAGGATGATGGCCGAATAGGTGATGCTGCTGACTGCTTTCAGGCAGCTTACATGCTTGATGAATCAGATCCCATTGAAAGTTTCAGCTGTATACATTGA 2025 0.4336 MESSGNECLTVREVCANGSCIKTSELEAKLDEGNIQEAEAALREGLSINSEEARALLGKLEYQRGNVEGALHVFDGIDLQAAIQRLQTSLSEKPPIKKGPARTESPTSVSQHAAKAANECKHVLDAVEKIFCQGIPDTQVDNKLQEIVSHAVELLPELWKQAGCYSEAISAYRQALLSQWNLDNDCCARIQKAFAVFLLYSGVEASPPSLAVQIEGSYVPKNNLEEAILLLMILLRKFSLACGQTSLLAKQLEELMPGVYHRIDRWNSLALCYSGAGQDKSALNLLRKSVHKHERPDDLISLLLAAKICSEDPHLAAEGAGYAQRAIDNAQGLHDHLKGAGLRMLGLCLGKQAKVASSDFERSMLQSKALQSLEEAVRLEQNNSDLIFELALQYAEHRNLAAALRCAKQFFDKTGGSKLKGWRLLALVLSAQKRFSEAEVVTDAALDETAKWEQGPLFRLKAKLKISQLRPMDAIEIYRYLLALVQAQRKSSGPLRLSSQAEDDKISEFDVWHGLANLYASLSHWKDAEICLQKARELKEYSGATVHTEGKNKTFMLLKVLYFSIFNLCVMFEGRGQNPEALAAAATAVLFEPNHAPSKILMGSLTLKMGPKALPVARSLLSDALRLEPTNRMAWYNLGLTHKDDGRIGDAADCFQAAYMLDESDPIESFSCIH 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi183g00020 674 ProSiteProfiles TPR repeat profile. 632 665 IPR019734 GO:0005515
Sebi183g00020 674 SMART tpr_5 562 595 IPR019734 GO:0005515
Sebi183g00020 674 SMART tpr_5 419 452 IPR019734 GO:0005515
Sebi183g00020 674 SMART tpr_5 509 542 IPR019734 GO:0005515
Sebi183g00020 674 SMART tpr_5 263 296 IPR019734 GO:0005515
Sebi183g00020 674 SMART tpr_5 632 665 IPR019734 GO:0005515
Sebi183g00020 674 SUPERFAMILY TPR-like 368 539 IPR011990 GO:0005515
Sebi183g00020 674 Gene3D Tetratricopeptide repeat domain 357 462 IPR011990 GO:0005515
Sebi183g00020 674 Gene3D Tetratricopeptide repeat domain 463 668 IPR011990 GO:0005515
Sebi183g00020 674 PANTHER PROTEIN NPG1 115 671 IPR043376 -
Sebi183g00020 674 Gene3D Tetratricopeptide repeat domain 21 356 IPR011990 GO:0005515
Sebi183g00020 674 Pfam Tetratricopeptide repeat 634 664 IPR019734 GO:0005515
Sebi183g00020 674 SUPERFAMILY TPR-like 501 662 IPR011990 GO:0005515
Sebi183g00020 674 Pfam Tetratricopeptide repeat 389 445 - -
Sebi183g00020 674 Pfam Tetratricopeptide repeat 28 74 - -
Sebi183g00020 674 SUPERFAMILY TPR-like 30 287 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi183g00020 Sebi-Chr183 658210 662927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi183g00020 11 673 Calmodulin-binding Proteins AT2G43040 66.856 0.0 892
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi183g00020 K21843 - gmx:100811897 1060.83