Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi183g00018 ATGGCACCAGATAACAATGATCAGCCACCACCAGTCTTCAGTGGCAAATTTAGTGTGATACTAATTGCAATGGGTTCAGCTAGTTTTGTGGTCACAATGTACCATCTCATAGTCATTTGCTGCCAACACTCAGCAGAAGCAAGGCGACAGAGGCATCTAGAACTGGTCACCACCGAAGCTGAGGCAACACCGAGCACTACCGGAGAGAACAATTCGGTGGCACACCTGATTCCAGCCCACAAGTATGAGAAGAAGAGTTGTGATGAATATGATGATGGCACTTGTGCTGTGTGCTTAGGTGACTTTGAGGAGGGTGAAGAGGTTAAGACGTTGCCCTTGTGTATGCACTCTTTCCATGTACCATGCATAGATATGTGGTTCCATTCTCACTCTACCTGTCCTGTTTGCCGCGCTGATGCAACACCCTCGCCGGCACCCCATCAGTCGCCAGAGCTTGTTTCCGGCGAGGTGAATGCACATCACAGTATAGATATGATGCAAATAGCTCTCGTGCAAAATGGGTTGGTTCGGCGGTGA 537 0.4898 MAPDNNDQPPPVFSGKFSVILIAMGSASFVVTMYHLIVICCQHSAEARRQRHLELVTTEAEATPSTTGENNSVAHLIPAHKYEKKSCDEYDDGTCAVCLGDFEEGEEVKTLPLCMHSFHVPCIDMWFHSHSTCPVCRADATPSPAPHQSPELVSGEVNAHHSIDMMQIALVQNGLVRR 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi183g00018 178 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
Sebi183g00018 178 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 17 142 IPR044675 -
Sebi183g00018 178 Pfam Ring finger domain 94 137 IPR001841 -
Sebi183g00018 178 SUPERFAMILY RING/U-box 84 143 - -
Sebi183g00018 178 SMART ring_2 95 136 IPR001841 -
Sebi183g00018 178 CDD RING-H2_EL5-like 95 137 - -
Sebi183g00018 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 142 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi183g00018 Sebi-Chr183 477848 478384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi183g00018 19 149 C3H Transcription Factor Family AT5G17600 37.143 1.60e-21 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi183g00018 - - lja:Lj0g3v0111029.1 218.394