Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi183g00009 ATGAAACAGCCATCAAAGCCATGGAGGCCATTAACAACAAACTGCTGCACAGTTGAGGACCAAACCATCCTTGGCAATTTCAGTCGCTACAAGCGCTCAACTTCAAATGTGTCCAAGGACAGTGTTTCTTCACCTTCTTCATTTCAGTGGCTGTTTTCCTCTGATCTTAGCCATTCCTCGTTCATAAGATCCAATGAGGATCTTGCAGAATCTTTTGTGTCGGATTTATATGATTTTGAGCTTAGTGAGCTTCGTGCAGTTACGCAGAATTTTTCAAGCAATTTCTTGCTGGGTAAAGGTGGATTTGGAACAGTTCATAAGGGTTATATAGATGGGAACTTGAGATGTGGTTTGAAAGCCCAACCTGTTGCTGTTAAGGTTCTCAACATTGAAGGCTTACAAGGACACCGTGAGTGGCTTGCAGAAGTGATATTTCTTGGGCAGCTAAGACACCAAAATCTGGTCAAATTGATTGGCTATTGTTGTGAGGATGAAGAAAGGCTACTCGTCTATCAATTCATGCCAAGGGGAAGCTTGGAGAATCACTTGTTCAGAAGAACAACATCACTACCATGGGCAACAAGACTAAAAATTATAGTAGGTGCAGCTAAAGGCCTTGCCTTCTTGCATGGATCTGAGAATCCAGTCATTTTCCGAGACCTCAAGACTTCAAACATCTTGCTTGATTCAGATTTCACAGCCAAACTGTCAGATTTTGGACTTGCAAAAATGGGGCCAGAGGGATCAAAGTCACATGTCACAACCAGAGTTATGGGCACTTATGGATATGCAGCCCCAGAATACATTTCCACAGGGCACTTGACAACAAAGAGTGATGTCTATAGCTTTGGGGTAATCCTGCTAGAACTGCTTACAGGAAGGAGAGCAGTGGACAAGAAAAGACCAAAGACTGAGCAAAACCTTGTGAATTGGTCAAGACCATACTTGAATAATAGCAAGAGGTTGCGGTGCATCATGGATCCAAGGCTTGCAGGACAATATTCTGTTAAGGGTGCAAAGGAGATGGCCCTTTTGGCATTGCAGTGCTTAAGTTTGAATCCTAAAGACAGGCCAAGAATGGTAACAGTTATTGAAACTCTTGAAAGCTTGCAACAGTTCAAGGACATGGCAGTTACACGTGGACACTGGCCGGCATCACCACAATATAGTACAAATAGACCATCCAATAAGGTGAAAATTGATCTTAGAGCAGGTGCAAACCACAGGAGGCTCTCTCCTCTTGTTTCAAACAGAACAACTTGA 1263 0.4307 MKQPSKPWRPLTTNCCTVEDQTILGNFSRYKRSTSNVSKDSVSSPSSFQWLFSSDLSHSSFIRSNEDLAESFVSDLYDFELSELRAVTQNFSSNFLLGKGGFGTVHKGYIDGNLRCGLKAQPVAVKVLNIEGLQGHREWLAEVIFLGQLRHQNLVKLIGYCCEDEERLLVYQFMPRGSLENHLFRRTTSLPWATRLKIIVGAAKGLAFLHGSENPVIFRDLKTSNILLDSDFTAKLSDFGLAKMGPEGSKSHVTTRVMGTYGYAAPEYISTGHLTTKSDVYSFGVILLELLTGRRAVDKKRPKTEQNLVNWSRPYLNNSKRLRCIMDPRLAGQYSVKGAKEMALLALQCLSLNPKDRPRMVTVIETLESLQQFKDMAVTRGHWPASPQYSTNRPSNKVKIDLRAGANHRRLSPLVSNRTT 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi183g00009 420 PANTHER OS01G0588500 PROTEIN-RELATED 47 371 - -
Sebi183g00009 420 SMART serkin_6 91 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi183g00009 420 Gene3D Phosphorylase Kinase; domain 1 52 173 - -
Sebi183g00009 420 FunFam Serine/threonine-protein kinase PBS1 174 382 - -
Sebi183g00009 420 CDD STKc_IRAK 97 370 - -
Sebi183g00009 420 Gene3D Transferase(Phosphotransferase) domain 1 174 382 - -
Sebi183g00009 420 ProSitePatterns Protein kinases ATP-binding region signature. 97 126 IPR017441 GO:0005524
Sebi183g00009 420 ProSiteProfiles Protein kinase domain profile. 91 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi183g00009 420 SUPERFAMILY Protein kinase-like (PK-like) 72 368 IPR011009 -
Sebi183g00009 420 Pfam Protein tyrosine and serine/threonine kinase 97 367 IPR001245 GO:0004672|GO:0006468
Sebi183g00009 420 FunFam Serine/threonine-protein kinase BIK1 58 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi183g00009 Sebi-Chr183 315850 319874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi183g00009 79 410 Glycoside Hydrolase AT3G07070 48.214 5.78e-104 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Sebi183g00009 PK_Tyr_Ser-Thr 2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi183g00009 - - gmx:100804970 671.774