Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi182g00147 ATGAACGAACACTCTGCACCTGCAACTGAAAGGAGACATGACTTCGGAAAGTTGCAACATGGATGTGAGCACTATAAGAGAAGATGCAAAATTCGAGCCCCATGCTGCAATCAGATTTTCTCCTGTCGTCACTGTCACAACGAATCTATGAGCTCATCTAGCAACTCCAGGGATGTTCATGAACTTGTTAGACGCGATGTTAAGCAGGTTATATGTTCAATCTGTGATACTGAGCAGGAGGTTGCCAAGGTGTGCTTTAATTGTGGCGTCAACATGGGAGAATATTATTGCGAGATTTGCAAATTCTATGATGATGATACAGATAAAGGGCAATTTCATTGTGATGAATGTGGGATTTGCAGGGTTGGTGGTCGTGATAAGTTCTTTCACTGTACGAAATGTGGCTCTTGCTATTCAATGAGCTTGCAAAACAATCACTCATGTGTAGAGAACTCAATGAAGAGTTCCTGCCCTGTCTGTTTTGAGTACCTATTTGATTCAATAAAAGGAAGTACAATTTTGCGGTGTGGACACACAATGCATACTGAATGCTATCAAGAGATGGCTACTCAAAATCAATATCGTTGTCCTATCTGCTTGAAGACAATATTTGATATGTCTCAGAACTGGGAACATTTAGATCGAGAGATTGAAGCTGCTCCTATGCCCAACGAGTGTAATTTTGAGGTTTCAATTCTTTGCAATGATTGTAACGCTACCAGCACAGTCTCCTTTCACATATTTGGTCACAAGTGCAGACAGTGCAGTTCGTATAACACCCGTCGGATTTCGACACCCGCACAGCAGTGA 810 0.4185 MNEHSAPATERRHDFGKLQHGCEHYKRRCKIRAPCCNQIFSCRHCHNESMSSSSNSRDVHELVRRDVKQVICSICDTEQEVAKVCFNCGVNMGEYYCEICKFYDDDTDKGQFHCDECGICRVGGRDKFFHCTKCGSCYSMSLQNNHSCVENSMKSSCPVCFEYLFDSIKGSTILRCGHTMHTECYQEMATQNQYRCPICLKTIFDMSQNWEHLDREIEAAPMPNECNFEVSILCNDCNATSTVSFHIFGHKCRQCSSYNTRRISTPAQQ 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi182g00147 269 Pfam CHY zinc finger 22 102 IPR008913 GO:0008270
Sebi182g00147 269 SUPERFAMILY RING/U-box 156 206 - -
Sebi182g00147 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 210 IPR013083 -
Sebi182g00147 269 Pfam Zinc finger, C3HC4 type (RING finger) 157 199 IPR018957 GO:0046872
Sebi182g00147 269 Pfam Zinc-ribbon 204 261 IPR039512 -
Sebi182g00147 269 ProSiteProfiles Zinc finger CHY-type profile. 15 90 IPR008913 GO:0008270
Sebi182g00147 269 ProSiteProfiles Zinc finger RING-type profile. 157 199 IPR001841 -
Sebi182g00147 269 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 8 267 - -
Sebi182g00147 269 SMART ring_2 157 199 IPR001841 -
Sebi182g00147 269 ProSiteProfiles Zinc finger CTCHY-type profile. 92 156 IPR017921 -
Sebi182g00147 269 SUPERFAMILY Zinc hairpin stack 93 150 IPR037275 -
Sebi182g00147 269 Gene3D - 227 268 - -
Sebi182g00147 269 SUPERFAMILY CHY zinc finger-like 18 91 IPR037274 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi182g00147 Sebi-Chr182 1548671 1553009 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi182g00147 14 265 C2H2 Transcription Factor Family AT3G18290 41.699 1.82e-54 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi182g00147 K10144 - gmx:100818374 476.478