Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi182g00139 ATGGAATTGTACGGTCGAAACCCGGCAAGGAATGGGTCGAACCCGGGGAATCAACCCGAATGGCGCTCACCAGCCGGCGATACTAGTCTCGAAGAATCCATGTGGCACTTGACGCTCAGTAGCAGCGAATCGTACCCGGAGCGACCCGGTGTTCCCAATTGTGTGTATTACATGCGAACCGGGTTCTGTGGATATGGTAGCAGGTGTCGGTACAGTCATCCTCGTGATCGAGCTGCGGTTGCGGCAGCTGTAAGAGCTACAGGGGAGTACCCAGAACGAGTGGGGGAGCCTCCATGTCAGTATTATTTAAAAACTGGAACATGTAAATTTGGTGCATCCTGTAAATTCCACCATCCGAAACATGGAGGTGGATCTTTGAGCCAAGCTCCTCTAAATATTTATGGATACCCGTTACGGCCGGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAATGTAAATTTGGTATAACTTGTAAATTCCATCATCCTCAAACTGCTGCTGGCACATCAATGCCGGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCAACAGTTCCCCTGCCTGACCAGTATGGGGGAGCATCCACGAGCTTGAGAGTGGCTAGGCCTCCTATGTTGCCTGGTTCATATGTACAGGGGGCTTATGGTCCTGTACTTCTTTCCCCAGGGGTTGTTCCATTTCCTGGATGGAATCCGTACTCGGCACCTGTAAGTCCTGTATTATCTCCTGGTGCTCAACCTGCTGTCGGGGCTACTTCTCTATATGGAGTGACCCAGTTGTCTTCATCAACATCAGCTTTTGCTAGACCGTACACTCCTCTTCCCTCTTCTACTGGCCCTTTGGGCAGTAACCCAAAGGAACAAGTGTTTCCTGAAAGACCTGGTGAACCTGAATGCCAATATTATCTCAGAACAGGGGATTGTAAATTTGGGTTAGCTTGTCGATATCATCATCCTCGAGACCGGGTAACACAGCCACTTCTCAGCCCCATTGGTCTTCCTCTACGTCCAATCTTGGCTCAGTTATATTGCCCTGAACTTGCCGATTTGTATTTACTGTGGTTCACAATATTTTTTCACCCTGAACATTTGTTCATTCCTCATATGGATAAGTAG 1128 0.4858 MELYGRNPARNGSNPGNQPEWRSPAGDTSLEESMWHLTLSSSESYPERPGVPNCVYYMRTGFCGYGSRCRYSHPRDRAAVAAAVRATGEYPERVGEPPCQYYLKTGTCKFGASCKFHHPKHGGGSLSQAPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQTAAGTSMPASAPQFYQQVQSPTVPLPDQYGGASTSLRVARPPMLPGSYVQGAYGPVLLSPGVVPFPGWNPYSAPVSPVLSPGAQPAVGATSLYGVTQLSSSTSAFARPYTPLPSSTGPLGSNPKEQVFPERPGEPECQYYLRTGDCKFGLACRYHHPRDRVTQPLLSPIGLPLRPILAQLYCPELADLYLLWFTIFFHPEHLFIPHMDK 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi182g00139 375 ProSiteProfiles Zinc finger C3H1-type profile. 297 325 IPR000571 GO:0046872
Sebi182g00139 375 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Sebi182g00139 375 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Sebi182g00139 375 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Sebi182g00139 375 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Sebi182g00139 375 SMART c3hfinal6 297 324 IPR000571 GO:0046872
Sebi182g00139 375 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Sebi182g00139 375 MobiDBLite consensus disorder prediction 1 27 - -
Sebi182g00139 375 Gene3D - 123 175 - -
Sebi182g00139 375 PANTHER PROTEIN PHOSPHATASE RELATED 33 341 - -
Sebi182g00139 375 MobiDBLite consensus disorder prediction 10 24 - -
Sebi182g00139 375 SUPERFAMILY CCCH zinc finger 96 120 IPR036855 GO:0046872
Sebi182g00139 375 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872
Sebi182g00139 375 SUPERFAMILY CCCH zinc finger 141 167 IPR036855 GO:0046872
Sebi182g00139 375 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 299 324 IPR000571 GO:0046872
Sebi182g00139 375 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Sebi182g00139 375 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 166 IPR000571 GO:0046872
Sebi182g00139 375 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Sebi182g00139 375 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Sebi182g00139 375 SUPERFAMILY CCCH zinc finger 301 326 IPR036855 GO:0046872
Sebi182g00139 375 Gene3D - 46 122 - -
Sebi182g00139 375 Gene3D - 287 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi182g00139 Sebi-Chr182 1484102 1486486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi182g00139 1 341 C2H2 Transcription Factor Family AT5G18550 51.667 1.39e-114 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sebi182g00139 zf-CCCH 8.1e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi182g00139 - - lja:Lj5g3v1665190.3 654.055