Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi182g00135 ATGGTGGAGAGGAGGAAGCCTCTAGTACTGTGTTCCACCAAACATGTCATCAATTCCTTATTGGGGCCTTCCACTTCCACTCCTCCAAGTAACGACCATGAATCTTGCTCCAGTTTCCACTTACCCGTTGGGATTCTCCGATTCTCCAACCAATCTCAATTCCCTTCTCTTGATCACTCTTCACTCATCGGCCTCTCCACTTCAATTCTCAAAAGGCTTTCTATTACTTCAGGTTCACCGGTTCTGGTCAAGAATGCTGAGATGAACATACAGAGAATTGCAGTGGCCGTTGCTCTGGATCCTCCTGGTACCACACCTGATATAGAGTCACCCCCTTCTTCTCGAATAATGCTTGTTTTTCCTTCTTGTGATTTCCCTCGTAGTGGCCCCTTACATGGGCAAGACGCCTTAGAATCTTATTTTAAGCCTCGAGGTCAAGGGGATGATGAGGATGCTGCTAAAAGCATTAAGGATTCTGTCATCAACATGGAATTGGCACCTATTTTTCAACCTCCAAGATTTGCCTCACTTCTGAGGGTTGCTTTTGTGAAGATACCTGAATGTGGCATCCTTGAGTCTATTAGAGCAAGTTCACCTATTGAATCCCAAGAACGTCAAGACATGATTGACTTGGCATTGCAAAAGTATTTTGAAGTCGATAGGTATTTGTCAAAAGGAGATGTTTTCGGAATTAACATTAGTTGGAACTGCAATTCTGCCATTTGCATTGCATGCAACCAAAAACTGCAGAAGAAAAATGACAACCTTATATGTTTCAAGGTCATTGCTATGGAACCATCAGATGAACCGGTTCTTCGTGTCAATAAAACCTTAACTGCTCTGGTGCTAGTAGGGAGTTCCCCATCCGCCCTTCCTCCGGATTTGTTAGTTGCTGGACCAGAAGGGCCTGTGCCTTTGCAAAGGGACACAGTAAAGATCTTGGCTTCAATACTTGCACCAACTTTATGTCCATCAGCACTTTCTTCCAAGTTCAGAGTTTCAGTTCTATTGTATGGCTTGGCAGGTTGTGGGAAAAGGACTGTCGTTAGATATGTTGCTCGTAGATTGGGCCTGCACGTGGTGGAATATAACTGTCATGATCTAATGGTATCTGACAGAACTTCTGTTGCTCTAGCTCAAGCTTTCAAGACGGCTCGAAGATACTCACCAACAATACTTCTTCTTCGTCATTTTGATGTTTTTCGAGATCCGCATTCGCCTGAGGGTTCACTAAATGATCAAAGAGGCAATACATCTGAAGTTGCATCAGTTATTAGGAAATTCACTGAGCCAGTCAGTGAACATGGTGATAGTAACTCCCTAATGAAATCAAACGGAGAATTGGTGGAGAAGAATGCTGAAAAGACAAGTGGGCATCAGGTCCTGTTGATTGCAGCTGCTGACAGTTCAGAAGGTCTGCCTCCAACTATCAGACGCTGCTTTAGCCATGAAATAAGCATGGGGCCTTTGACTGAAGAGCAAAGGGCTGAGATGCTATTCCAGTCACTGCAAAGTATTTCTGGACTCCTCTCTAATACTGATTCGGAGGGTTTTGTAAAAGAAATAGTTGGACAGACATCTGGCTTTATGCCCAGGGATATGAGTGCTTTAATTGCTGATACTGGTGCCAACTTATTTCCCAAGAGCAATGCTGAAGTGGACAAGCATGGACCTGAAGATGTAGATAGTTCTCTTAGTTCCAAGGTGGCAGAGGACAACAATGAGTTAAAAGCTTCACCTGGGATTCCTGGGAAGGAAGACATGATGAATGCTTTGGAACGATCAAAGAAAAGAAATGCATCAGCATTAGGCACTCCAAAGGTTCCAAATGTGAAATGGGAAGATGTTGGTGGGCTCGAAGATGTCAAAAAATCAATCCTGGATACTGTTCAGTTACCTCTCCTGCATAAAGATCTATTTTCATCTGGGTTACGCAAGCGATCTGGTGTTCTTTTGTATGGTCCCCCTGGAACTGGCAAAACATTATTAGCAAAAGCTGTTGCTACAGAATGCTCCTTAAATTTTCTTAGTGTGAAAGGTCCTGAACTGATCAACATGTATATAGGAGAGTCTGAGAAGAATGTTCGAGACATTTTCCAAAAGGCCAGATCAGCACGGCCATGTGTAATCTTCTTTGATGAGCTTGATTCTCTTGCACCAGCTCGGGGTGCTTCTGGAGACTCTGGGGGTGTTATGGATAGAGTGGTTTCTCAGATGCTTGCAGAGATTGATGGCTTAAGTGATTCAACACAGGATCTATTTATTATAGGTGCAAGTAATAGACCAGATTTGATAGACCCAGCACTTTTGCGCCCTGGTCGATTTGATAAACTGCTATATGTTGGAGTTAACTCTGATGCATCTTACCGGGAGCGGGTACTGAAAGCTCTTACCCGAAAGTTCAAACTGCATGAAGATGTTTCACTTTATTCTATAGCAGAAAAATGTCCACCAAACTTCACCGGTGCAGACATGTATGCCTTGTGTGCAGATGCTTGGTTCCACGCCGCAAAGCGCAAGGTTTTAAGTGCAAATCCAGAGTCTTCCAGCCAAGATAATGATGCAGATTCTGTTGTTGTTGAATACAATGATTTTGTCCAGGTCTTAGCAGAACTGCCACCTTCCCTCTCCATGGCTGAGCTTAGGAAGTACGAGAAACTGAGAGATCAATTTCAAGGCACCTCTAAATGA 2691 0.4359 MVERRKPLVLCSTKHVINSLLGPSTSTPPSNDHESCSSFHLPVGILRFSNQSQFPSLDHSSLIGLSTSILKRLSITSGSPVLVKNAEMNIQRIAVAVALDPPGTTPDIESPPSSRIMLVFPSCDFPRSGPLHGQDALESYFKPRGQGDDEDAAKSIKDSVINMELAPIFQPPRFASLLRVAFVKIPECGILESIRASSPIESQERQDMIDLALQKYFEVDRYLSKGDVFGINISWNCNSAICIACNQKLQKKNDNLICFKVIAMEPSDEPVLRVNKTLTALVLVGSSPSALPPDLLVAGPEGPVPLQRDTVKILASILAPTLCPSALSSKFRVSVLLYGLAGCGKRTVVRYVARRLGLHVVEYNCHDLMVSDRTSVALAQAFKTARRYSPTILLLRHFDVFRDPHSPEGSLNDQRGNTSEVASVIRKFTEPVSEHGDSNSLMKSNGELVEKNAEKTSGHQVLLIAAADSSEGLPPTIRRCFSHEISMGPLTEEQRAEMLFQSLQSISGLLSNTDSEGFVKEIVGQTSGFMPRDMSALIADTGANLFPKSNAEVDKHGPEDVDSSLSSKVAEDNNELKASPGIPGKEDMMNALERSKKRNASALGTPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLSDSTQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDASYRERVLKALTRKFKLHEDVSLYSIAEKCPPNFTGADMYALCADAWFHAAKRKVLSANPESSSQDNDADSVVVEYNDFVQVLAELPPSLSMAELRKYEKLRDQFQGTSK 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi182g00135 896 MobiDBLite consensus disorder prediction 552 566 - -
Sebi182g00135 896 SMART AAA_5 646 786 IPR003593 GO:0016887
Sebi182g00135 896 SMART AAA_5 331 491 IPR003593 GO:0016887
Sebi182g00135 896 FunFam Peroxisome biogenesis protein 6 304 488 - -
Sebi182g00135 896 FunFam Peroxisome biogenesis protein 6 784 870 - -
Sebi182g00135 896 FunFam Peroxisomal biogenesis factor 6 608 797 - -
Sebi182g00135 896 Pfam ATPase family associated with various cellular activities (AAA) 335 486 IPR003959 GO:0005524|GO:0016887
Sebi182g00135 896 Pfam ATPase family associated with various cellular activities (AAA) 650 782 IPR003959 GO:0005524|GO:0016887
Sebi182g00135 896 MobiDBLite consensus disorder prediction 549 586 - -
Sebi182g00135 896 Gene3D - 608 885 IPR027417 -
Sebi182g00135 896 Gene3D - 784 870 - -
Sebi182g00135 896 CDD RecA-like_PEX6_r2 622 781 IPR047533 -
Sebi182g00135 896 PANTHER AAA-FAMILY ATPASE 57 893 - -
Sebi182g00135 896 Gene3D - 304 508 IPR027417 -
Sebi182g00135 896 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 303 548 IPR027417 -
Sebi182g00135 896 ProSitePatterns AAA-protein family signature. 753 771 IPR003960 GO:0005524|GO:0016887
Sebi182g00135 896 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 609 890 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi182g00135 Sebi-Chr182 1454774 1461165 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi182g00135 616 853 Calmodulin-binding Proteins AT3G56690 39.331 6.53e-40 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi182g00135 K13339 - gmx:100820183 1458.35