Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi182g00131 ATGGCAACAAACAGATTCGTCTGTGAAATCTGCAACAAAGGGTTTCAGAGAGACCAAAACCTTCAGTTACACCGCAGAGGTCACAATCTTCCATGGAAACTGAGGCAAAGAACAAGCAATGAGGTGAAGAAACGGGTCTATGTGTGCCCTGAGCCATCATGTGTCCACCATAACCCAGCTCGTGCATTAGGAGACCTCACTGGCATCAAAAAGCATTATAGCCGCAAACATGGTGAGAAGAAATGGAAGTGTGACAAGTGCTCTAAAAGATATGCTGTCCAATCTGATTGGAAGGCCCACCAGAAAACATGTGGTACTAGGGAATACAAATGTGATTGTGGAACCATATTTTCCAGGAGAGATAGTTTTATCACCCACAGAGCTTTCTGTGATGCATTAACTGAAGAAAATAACCGAGTGAACCAGGGATTAACCAGTGGCATGCCACCAAATTTGCAAAGTCAAATGCCTGATCTTATGTCTTCTTTACCTCTAAAAGCTAGTTCCAACACTGCATCAGAATTCAATGACTATGACCCTAAGAACTCACTCAGATCACCCCCACAAGAACTTGTCCCAATACCATTCAGGTCCATGGGTGGGGGCATGTTCTCCACCAATGCAGGTGCACTTTTTGGGGGTCCAAAAACCATGTCCCCTTCTTCTTCCAGCCTTCAGCTCAGTTCCAACATCAATTACTTGCAAGACAGCAAAAATGGAGGACTAATTTCTGGCACAGCTCAGATGTCTGCAACAGCTTTATTACAGAAAGCAGCACAAATGGGTGCCACTGCAAGCAATAGTGTAAACTCCCCCATGATGCAAAAAGGCTTTGTTAGTAGCATGGCTGGTCCTGATCAAGTTCCTTCCATTAGACCACCATTTTCTGGTGCCATATTGCAGCATAACCACCCTTCCTATGACCACTTCCCTCCCCATCCTGATCTATCTAACATAGCAGGGGTAAGTGGTGGTGGAGCATTCACCAACCAATTGTTTCAAAAAGGACAAGAAGAAGCTTCACAACTATTTGATACTAACACTACTGCTGGTTCTACAATGAATGATATAGGAATGTTCAGCCAAATGTCTATGGGAAATCACCACAACCCAGAATTGATGAAGAATGTGGAACATTCTAGTTTGATCCATGGAAGAAATGTGGTAGAAAGTAACACAATGGAGCCACCAAGGTTTGGAGGTAGTGACATGACAACAGTTCATGACTTTTTGGGCATTGGGGGTTCAACTTCAAGAGCAGCTAGTTTGCATGACCCACAGCAACAAAGATTGGAAGCATTAAGCCACCAGAGGTTGGAAATTATGAATCACTTTCATCACCATCTTCCACATGAGGATTCAGCTATGGAGAAACCCATTTGGGATGTTTGA 1392 0.4375 MATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSNEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNQGLTSGMPPNLQSQMPDLMSSLPLKASSNTASEFNDYDPKNSLRSPPQELVPIPFRSMGGGMFSTNAGALFGGPKTMSPSSSSLQLSSNINYLQDSKNGGLISGTAQMSATALLQKAAQMGATASNSVNSPMMQKGFVSSMAGPDQVPSIRPPFSGAILQHNHPSYDHFPPHPDLSNIAGVSGGGAFTNQLFQKGQEEASQLFDTNTTAGSTMNDIGMFSQMSMGNHHNPELMKNVEHSSLIHGRNVVESNTMEPPRFGGSDMTTVHDFLGIGGSTSRAASLHDPQQQRLEALSHQRLEIMNHFHHHLPHEDSAMEKPIWDV 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi182g00131 463 Gene3D Classic Zinc Finger 6 49 - -
Sebi182g00131 463 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Sebi182g00131 463 FunFam protein indeterminate-domain 5, chloroplastic-like 60 139 - -
Sebi182g00131 463 SUPERFAMILY beta-beta-alpha zinc fingers 5 103 IPR036236 -
Sebi182g00131 463 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 427 IPR031140 -
Sebi182g00131 463 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Sebi182g00131 463 Pfam Zinc finger, C2H2 type 6 28 IPR013087 -
Sebi182g00131 463 FunFam Zinc finger protein MAGPIE 2 29 - -
Sebi182g00131 463 Gene3D Classic Zinc Finger 61 140 - -
Sebi182g00131 463 SMART c2h2final6 47 77 IPR013087 -
Sebi182g00131 463 SMART c2h2final6 6 28 IPR013087 -
Sebi182g00131 463 SMART c2h2final6 82 102 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi182g00131 Sebi-Chr182 1388410 1390310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi182g00131 1 283 IDZ Gene Family AT3G50700 52.597 4.28e-97 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi182g00131 zf-C2H2 0.0046 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi182g00131 - - gmx:100782774 713.375