Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi182g00110 ATGAAGTTCTGCAAAAAATACCAAGAGTACATGCAAGGCCAGGAGAAGAAGCTTCCTGGGGTTGGTTTCAAGAAGCTTAAGAAGATTTTGAAAAAGTGCAGAAAAGATTATCAATCCCAGAAAGCCCTTCATGCATCCCATGGCCATGGCGTCAGAACCTGCCCTGACCATTGCCCAGTGTGCGATGGGACCTTCTTCCCTTCCCTTCTCAATGAAATGTCAGCAATTGTTGGCTGCTTTAATCAGCGTGCTCAGAAATTGCTGGAGCTACACCTCGCTTCTGGCTTCAGAAAGTACCTTTTCTGGTTCAAAGGCAAATTACAAGGGAGCCATACTGCTCTAGTTCAAGAAGGCAAAGATCTGGTTACTTATGCACTCATTAATGCCATTGCAATTCGAAAAATACTAAAGAAATATGATAAGATTCATTATTCCAAGCAAGGGCAATTATTCAAGTCACAAGTCCAGAGTATGCACAAGGAAATTCTTCAAAGTCCCTGGCTTTGTGAGCTTATGGCCTTCCACATTAATTTAAGGGAAACCAAGGTCAAGTCAAGGAAGGCACCTGCTTTGTTTGATGGATGTTCACTCACATTTAAGGATGGAAAACCATCTCTTACTTGTGAGCTCTTTGATTCTATCAAAATTGATATTGACTTGACTTGTTCTATATGCTTGGACACAGTGTTTGATCCAGTTTCACTGACTTGTGGCCATATATTCTGCTATACTTGTGCTTGCTCGGCTGCATCAGTATCTATTGTTGATGGACTTAAGGCAGCAAATCCTAAAGAGAAATGTCCTTTATGCCGAGAGGGTGCAGTTTATGAAGGTGCTGTGCACTTGGAAGAACTAAACATTCTGTTAGGCCGAAGCTGTCCGGAATACTGGGAGCAAAGGCTTCAAACAGAGAGGGCAGAAAGGGTTAAGCAAATAAAGGAACACTGGGAATCACAGAGTAGGGCATTCTTGGGCATCTAA 981 0.4251 MKFCKKYQEYMQGQEKKLPGVGFKKLKKILKKCRKDYQSQKALHASHGHGVRTCPDHCPVCDGTFFPSLLNEMSAIVGCFNQRAQKLLELHLASGFRKYLFWFKGKLQGSHTALVQEGKDLVTYALINAIAIRKILKKYDKIHYSKQGQLFKSQVQSMHKEILQSPWLCELMAFHINLRETKVKSRKAPALFDGCSLTFKDGKPSLTCELFDSIKIDIDLTCSICLDTVFDPVSLTCGHIFCYTCACSAASVSIVDGLKAANPKEKCPLCREGAVYEGAVHLEELNILLGRSCPEYWEQRLQTERAERVKQIKEHWESQSRAFLGI 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi182g00110 326 ProSitePatterns Zinc finger RING-type signature. 237 246 IPR017907 -
Sebi182g00110 326 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 325 IPR033326 -
Sebi182g00110 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 209 323 IPR013083 -
Sebi182g00110 326 CDD SPX_BAH1-like 2 149 - -
Sebi182g00110 326 SUPERFAMILY RING/U-box 215 274 - -
Sebi182g00110 326 CDD RING-HC_BAH1-like 212 285 - -
Sebi182g00110 326 Pfam Zinc finger, C3HC4 type (RING finger) 219 272 - -
Sebi182g00110 326 ProSiteProfiles Zinc finger RING-type profile. 222 271 IPR001841 -
Sebi182g00110 326 ProSiteProfiles SPX domain profile. 1 153 IPR004331 -
Sebi182g00110 326 SMART ring_2 222 270 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi182g00110 Sebi-Chr182 1209910 1212331 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi182g00110 219 271 C3H Transcription Factor Family AT4G28270 41.379 3.83e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi182g00110 K16275 - gmx:100787904 602.438