Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi182g00099 ATGACCATTTACATCAACAACCTTAACGAGAAAATTAAGATTGAGGAGTTGAAGAAGTCTTTGCATGCTGTTTTCAGTCAGTTCGGGAAGATACTTGACGTGTTAGCTTTCACGACCTTAAAACACAAGGGTCAAGCTTGGGTGGTCTTTGAAGATGTCTCTTCTGCTTCCAATGCCCTTAGGCAAATGCAAGGTTTCCCCTTCTATGATAAGCCCATGAGAATACAGTATGCAAAAACTAAATCCGATATAATAGCAAAAGCGGATGGTACTTTTGTTCCTAGGGAAAAACGTAAGAGGCATGATGACAAAGGCAAAAAAAGGAAGGACCAACTTGATGCTAATTTAGCTGGAATGGGCCTAAATCCTGCTTATTCTGGTGCTTATGGTGCAGCACCCGCTATACCTTATCCAGGTGGTGCAAAATCTATGGTACCTGAGGCTCCTGCGCCGCCAAATAATATTCTGTTTATTCAGAATCTTCCCAATGAGACAACTCCCATGATGCTGCAAATGCTCTTTCTTCAATATCCTGGATTCAAGGAAGTTAGAATGGTTGAAACAAAGCCAGGAATTGCCTTTGTGGAATATGGAGATGAGATGCAATCCACTGTAGCTATGCAGGCGCTGCAAGGTTTCAAGATAACCCCACAAAACCCTATGTTGATAACTTACGCCAAGAAATAG 687 0.4192 MTIYINNLNEKIKIEELKKSLHAVFSQFGKILDVLAFTTLKHKGQAWVVFEDVSSASNALRQMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPREKRKRHDDKGKKRKDQLDANLAGMGLNPAYSGAYGAAPAIPYPGGAKSMVPEAPAPPNNILFIQNLPNETTPMMLQMLFLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQALQGFKITPQNPMLITYAKK 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi182g00099 228 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 80 IPR000504 GO:0003723
Sebi182g00099 228 SUPERFAMILY RNA-binding domain, RBD 2 217 IPR035979 GO:0003676
Sebi182g00099 228 SMART rrm1_1 155 224 IPR000504 GO:0003723
Sebi182g00099 228 SMART rrm1_1 2 76 IPR000504 GO:0003723
Sebi182g00099 228 CDD RRM1_U1A_like 2 79 - -
Sebi182g00099 228 FunFam U1 small nuclear ribonucleoprotein A 1 100 - -
Sebi182g00099 228 Gene3D - 1 100 IPR012677 -
Sebi182g00099 228 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 154 228 IPR000504 GO:0003723
Sebi182g00099 228 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 156 215 IPR000504 GO:0003723
Sebi182g00099 228 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 73 IPR000504 GO:0003723
Sebi182g00099 228 FunFam U2 small nuclear ribonucleoprotein B'' 145 228 - -
Sebi182g00099 228 CDD RRM2_U1A_like 152 224 - -
Sebi182g00099 228 MobiDBLite consensus disorder prediction 92 113 - -
Sebi182g00099 228 Gene3D - 142 228 IPR012677 -
Sebi182g00099 228 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 69 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi182g00099 Sebi-Chr182 1101286 1104551 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi182g00099 1 92 Eukaryotic Initiation Factors Gene Family AT2G23350 28.723 8.42e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi182g00099 K11091 - gmx:100500002 389.037