Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi182g00089 ATGACCCTCAACAACTTGTCCATACTCACCCTCTCTGTTCTCCTTTTACTTTCCATAGCTGAAAAGTACCATGCAGCAGCACCTATTTTTACCCCAAGAACCATTTGCAACTCCACCACAGACCCTTCCTTCTGCAAAACCGTTCTTTCTAACCAAAATAACGGCACCATCTTTGACTATACCCGCATCTCTGTCCGAAAATCCCTGTCCCAATCCCGCAAATTCTTGAACTTACTCGATTCAATTCTTCAAGATAAATCCTCTTTGTCACAACCCACAATTTTCGCCCTTGAAGATTGTCGATTCCTCATTGAACTAAACTTCGAGTCCTTATCAAACATCCTTAACACCGTCGACAAAGCTAACGATGTTCTTCCCACCTCACAAGCAGAAGACGAGCACACCCTGCTCAGTGCTGTTCTCACAAACCAACAAACTTGTTCAGATGGCATTCAGTTCTCAGCTTCAGATCAAAGAGTGAAGAACGATCTTTCCTCCACACTCTCCAATGACACTAAGCTTCACGGTCTTTCACTTTCCCTGTTCGTGAAAGGTTGGGTGCCAGAGAAGAAAATCGCAACATCATGGCCAAAAAATGGAAGACATTTGAGCTTCCAGAATGGTCGTTTACCGTTGAAGATGTCAAATCAAGCACGTGCTATTTATGATTCGGCTAGAGGCCATGGGAGAAAACTGCTTCAAACATTGGATGAAAGCGTGACGGTTATAGATGTTGTGGTTGTTAGTCAAGATGGAAGTGGAAACTTCACAACTATCAATGATGCTATATCAGTTGCACCAAATAACACAGCTTCTGGTGTTGGCTACTTTCTAATTTTTGTCACTGAAGGTGTGTATCAAGAATATGTGTCTATTCCCAAAAACAAAAAGTACTTGATGATGGTTGGAGATGGAATCAATCGAACAATTATCACTGGTGATCACAATGTTGTTGATAATTACACAACATTCAATTCAGCAACATTTGCTGTGGTGGCAGAAGGATTCCTAGCAGTTAACATGACATTTCGCAACACTGCTGGGCCAAGCAAGCACCAAGCTGTTGCAGTAAGAAACGGGGCTGATTTGTCCACTTTCTATAGCTGTAGCTTTGAAGGGTATCAAGACACTTTATATACGCATTCTCTCAGGCAATTTTACCGTGAATGTGACATATATGGCACGGTTGACTTCATATTTGGAAATGCTGCTGTTGTTTTCCAAAATTGTAACTTGTATCCTCGCCTACCTATGAGTGGACAATTCAATGCTATCACTGCTCAAGGTAGAACTGACCCAAATCAAAATACTGGTACTTCTATACATAATGCAACCATAAAAGCTGCTGATGATTTGGCTCCTATGGTTGGTACTGTGAAAACATACCTTGGGAGGCCGTGGAAGGAGTACTCAAGGACTGTTTATATGCAATCTTTCATGGATAATTTGATAGATCCTGCTGGGTGGCGTGAATGGAGTGGGGATTTTGCATTAAGCACATTGTATTATGCAGAGTATAATAATACTGGACCTGGTTCGGATACTACAAATAGAGTGACTTGGCCTGGATATCATGTTATCAATGCTACTGATGCAGCCAATTTCACTGTGTCTAATTTCTTGGCTGGGGATAATTGGCTACCTCAAACTGGTGTTCCATACTTGAGTGGATTGATATAG 1680 0.4167 MTLNNLSILTLSVLLLLSIAEKYHAAAPIFTPRTICNSTTDPSFCKTVLSNQNNGTIFDYTRISVRKSLSQSRKFLNLLDSILQDKSSLSQPTIFALEDCRFLIELNFESLSNILNTVDKANDVLPTSQAEDEHTLLSAVLTNQQTCSDGIQFSASDQRVKNDLSSTLSNDTKLHGLSLSLFVKGWVPEKKIATSWPKNGRHLSFQNGRLPLKMSNQARAIYDSARGHGRKLLQTLDESVTVIDVVVVSQDGSGNFTTINDAISVAPNNTASGVGYFLIFVTEGVYQEYVSIPKNKKYLMMVGDGINRTIITGDHNVVDNYTTFNSATFAVVAEGFLAVNMTFRNTAGPSKHQAVAVRNGADLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNLYPRLPMSGQFNAITAQGRTDPNQNTGTSIHNATIKAADDLAPMVGTVKTYLGRPWKEYSRTVYMQSFMDNLIDPAGWREWSGDFALSTLYYAEYNNTGPGSDTTNRVTWPGYHVINATDAANFTVSNFLAGDNWLPQTGVPYLSGLI 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi182g00089 559 CDD PMEI-like_3 34 182 - -
Sebi182g00089 559 SUPERFAMILY Pectin lyase-like 245 557 IPR011050 -
Sebi182g00089 559 Pfam Pectinesterase 246 544 IPR000070 GO:0030599|GO:0042545
Sebi182g00089 559 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 34 182 IPR035513 -
Sebi182g00089 559 ProSitePatterns Pectinesterase signature 2. 392 401 IPR033131 -
Sebi182g00089 559 SMART PMEI_2 27 181 IPR006501 GO:0004857
Sebi182g00089 559 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 184 IPR035513 -
Sebi182g00089 559 Pfam Plant invertase/pectin methylesterase inhibitor 33 164 IPR006501 GO:0004857
Sebi182g00089 559 FunFam Pectinesterase 33 184 - -
Sebi182g00089 559 PANTHER PECTINESTERASE 19 548 - -
Sebi182g00089 559 FunFam Pectinesterase 239 558 - -
Sebi182g00089 559 Gene3D - 240 558 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi182g00089 Sebi-Chr182 1029222 1031285 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi182g00089 6 559 Carbohydrate Esterase AT4G02330 60.348 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi182g00089 K01051 - gmx:100813051 897.116