Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi182g00081 ATGTGTGGTGGTGCTATCATAGCTGAGTTCATACCCCGCAATCGATCTCGCCGTCTCACCGCTTCAGAACTATGGCCTAATACATTTGGCAAACACAATGATGAATCACAGTTCGATTATTCCCAACCTGATCAGGAGCAGGACCATCAACAATCACCACCCCATCTCAAAAGGTCCCAACTTTCCCCGGTGGACGAACAAGTTGAGAAGCCAGTGAAGAGGCAGAGGAAAAACCTCTACAGAGGGATTAGGCAGAGGCCATGGGGCAAATGGGCTGCTGAGATTCGTGATCCAAGAAAAGGGGTTCGTGTTTGGCTTGGTACTTTTAACACTGCTGAAGAAGCTGCAAGAGCTTATGACAGAGAAGCTAGAAAAATCCGTGGCAAAAAAGCCAAAGTCAATTTCCCAAATGAGGATGATCAATTCTCCATTCAACCTCGTTCTGTTCCTATTCCAACCCCTCCACTTCGACGCCAGGGTCTTCCTCCTCTGTATCAACAACAACAACCATATAGTTGCAATTTGAACCCTAAAAGTCTGAACTTGGAGTTCGGTTATGATCTGAATCAAGAAGGGACATTTCCTTCTCATGGTGGTGGCATAAACGGGGATCCAGTTTTTGGTTCTGTGGATGAGAGTTGCGGATATGGATCTGCATCTGGGTCAGAGGGTGCTTATTCAACAACAGAGTTCATGAGTTCGAATAATTTTGGTGGTGAAGAGAAAGTGGTGAATGAGGAAGCACAAGGGGTTGGAAGTGAAGAAACAAAGAACCAAGTGGAGAAGCTTTCGGAGGAGCTTATGGCTTATGAGAATTACATGAGGTTTTATCAAATTCCTTATTATGATGGCCAATCTGTTGCACCTAATACGACTGTTCAGGAAAGTGTGGTGGGAGATCTCTGGGCCTTTGATGCTGAGGCTGTTCCTTCTTCATCAACCCTGTGA 948 0.4557 MCGGAIIAEFIPRNRSRRLTASELWPNTFGKHNDESQFDYSQPDQEQDHQQSPPHLKRSQLSPVDEQVEKPVKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKVNFPNEDDQFSIQPRSVPIPTPPLRRQGLPPLYQQQQPYSCNLNPKSLNLEFGYDLNQEGTFPSHGGGINGDPVFGSVDESCGYGSASGSEGAYSTTEFMSSNNFGGEEKVVNEEAQGVGSEETKNQVEKLSEELMAYENYMRFYQIPYYDGQSVAPNTTVQESVVGDLWAFDAEAVPSSSTL 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi182g00081 315 MobiDBLite consensus disorder prediction 43 58 - -
Sebi182g00081 315 CDD AP2 80 137 IPR001471 GO:0003700|GO:0006355
Sebi182g00081 315 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Sebi182g00081 315 PRINTS Ethylene responsive element binding protein signature 102 118 IPR001471 GO:0003700|GO:0006355
Sebi182g00081 315 MobiDBLite consensus disorder prediction 62 76 - -
Sebi182g00081 315 ProSiteProfiles AP2/ERF domain profile. 79 136 IPR001471 GO:0003700|GO:0006355
Sebi182g00081 315 Pfam AP2 domain 80 128 IPR001471 GO:0003700|GO:0006355
Sebi182g00081 315 SUPERFAMILY DNA-binding domain 79 137 IPR016177 GO:0003677
Sebi182g00081 315 SMART rav1_2 79 142 IPR001471 GO:0003700|GO:0006355
Sebi182g00081 315 Coils Coil 253 273 - -
Sebi182g00081 315 Gene3D AP2/ERF domain 79 137 IPR036955 GO:0003700|GO:0006355
Sebi182g00081 315 FunFam Ethylene-responsive transcription factor 2 78 137 - -
Sebi182g00081 315 PANTHER DNA-BINDING DOMAIN 49 234 IPR044808 GO:0003700|GO:0009873
Sebi182g00081 315 MobiDBLite consensus disorder prediction 26 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi182g00081 Sebi-Chr182 925185 926243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi182g00081 1 137 AP2-EREBP Transcription Factor Family AT3G16770 54.610 5.85e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi182g00081 AP2 9.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi182g00081 K09286 - gmx:100780763 367.851