Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi182g00080 ATGGTCTCACTGAAGCTGCAAAAACGGCTCGCCGCCAGTGTCCTCAAGTGCGGAAGAGGCAAAGTTTGGCTCGATCCCAATGAAGGCAATGAAATCTCCATGGCCAATTCTCGGCAAAACATAAGGAAGTTGGTTAAGGATGGGTTTATCATCAGGAAACCTACCAAGATTCACTCCCGCTCACGTGCTCGTCGAATGAAGGAAGCCAAGAGGAAAGGACGACACTCTGGATATGGTAAGCGTAAGGGTACTAGGGAGGCAAGGCTTCCCACAAAAATCCTGTGGATGAGGAGAATGCGTGTACTCAGACGCCTGCTTCGTAAGTACAGGGAATCTAAGAAGATTGACAAGCACATGTACCATGACATGTATATGAAGGTTAAGGGTAATGTCTTCAAGAACAAGAGAGTTCTAATGGAGAGCATACACAAGTCCAAGGCTGAGAAGGCAAGAGAGAAGACCTTGTCTGACCAGTTTGAGGCCAAGCGTGCCAAGAACAAGGCCAGCAGAGAAAGGAAAATTGCTCGTAGGGAGGAGCGTCTGGCCCAAGGTCCTGGAGGAGATAAACCATCAGCTGCTCCCAGTGCACCACCTGCCACAGCATCACAGCCAGCCCAAGCACCAAAGAAGTCCAAGAAGTGA 642 0.4953 MVSLKLQKRLAASVLKCGRGKVWLDPNEGNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERLAQGPGGDKPSAAPSAPPATASQPAQAPKKSKK 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi182g00080 213 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Sebi182g00080 213 FunFam Ribosomal protein L19 1 56 - -
Sebi182g00080 213 Gene3D - 57 185 - -
Sebi182g00080 213 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Sebi182g00080 213 MobiDBLite consensus disorder prediction 57 85 - -
Sebi182g00080 213 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Sebi182g00080 213 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Sebi182g00080 213 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Sebi182g00080 213 FunFam Ribosomal protein L19 57 189 - -
Sebi182g00080 213 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Sebi182g00080 213 MobiDBLite consensus disorder prediction 196 213 - -
Sebi182g00080 213 MobiDBLite consensus disorder prediction 149 184 - -
Sebi182g00080 213 PANTHER 60S RIBOSOMAL PROTEIN L19 1 187 IPR039547 GO:0003723|GO:0003735|GO:0022625
Sebi182g00080 213 MobiDBLite consensus disorder prediction 57 79 - -
Sebi182g00080 213 MobiDBLite consensus disorder prediction 149 213 - -
Sebi182g00080 213 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi182g00080 Sebi-Chr182 919693 921261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi182g00080 1 213 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 84.507 2.49e-128 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi182g00080 K02885 - gmx:100527501 377.867