Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi182g00078 ATGTCCAGCGTCATTGATTCTAACGGTGCCGTTTGTTATTATTCAGTGCTTGGCATTTGCAAACATTCCACCGATGACGAAATCCGTTGCGCTTATCCAAGCAAGGCTCTGAATTTGTGTTTCTCTGTTTGGATTTTAATTAAGAAGTGGCATCCTGACCGGTGGATCAAGGACCCAAAGCTTGCACTAGAAGCCAAAAAGCGGTTTCAGCATATTCAAGAGGCTTATTCAGTTTTGTCCAATAAAAGGAAGAGAAGGATTTATGATGCTGGCTTGTTTGGTCTCATTGGAGAGGACGATGATGAGGATGAGAAAGGCATGTTGGAGGATCTTGAGGGATTGCTAATGGATATGATGGCAGATAGTGAAGAGATGGGCAAGTCTGGGTTAAGTTGGAGTTCATCTACATGTCCTACAAAAAGGACACGTATCTTATGA 438 0.4269 MSSVIDSNGAVCYYSVLGICKHSTDDEIRCAYPSKALNLCFSVWILIKKWHPDRWIKDPKLALEAKKRFQHIQEAYSVLSNKRKRRIYDAGLFGLIGEDDDEDEKGMLEDLEGLLMDMMADSEEMGKSGLSWSSSTCPTKRTRIL 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi182g00078 145 SMART dnaj_3 11 84 IPR001623 -
Sebi182g00078 145 MobiDBLite consensus disorder prediction 126 145 - -
Sebi182g00078 145 SUPERFAMILY Chaperone J-domain 9 93 IPR036869 -
Sebi182g00078 145 PRINTS DnaJ domain signature 43 58 IPR001623 -
Sebi182g00078 145 PRINTS DnaJ domain signature 64 84 IPR001623 -
Sebi182g00078 145 PRINTS DnaJ domain signature 14 32 IPR001623 -
Sebi182g00078 145 MobiDBLite consensus disorder prediction 127 145 - -
Sebi182g00078 145 Pfam DnaJ domain 46 89 IPR001623 -
Sebi182g00078 145 Gene3D DnaJ domain 4 107 IPR036869 -
Sebi182g00078 145 ProSiteProfiles dnaJ domain profile. 12 92 IPR001623 -
Sebi182g00078 145 CDD DnaJ 12 81 IPR001623 -
Sebi182g00078 145 PANTHER PUTATIVE, EXPRESSED-RELATED 9 124 - -
Sebi182g00078 145 ProSitePatterns Nt-dnaJ domain signature. 69 88 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi182g00078 Sebi-Chr182 907554 908489 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi182g00078 12 90 C2H2 Transcription Factor Family AT1G74250 40.000 1.37e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi182g00078 - - gmx:100794942 158.688