Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi182g00068 ATGGCAGCGGAAGATCTTCATTCATTCATAAGTAACAAAGGAAGCATGTCAGATTATATTCACAGCTCAACACCAAAATTATTTGGTTTCCCACTAACAGAGCAGGACGAATTTCCAGAAAGGAAATACGATGTTGAAGAGGACAGGAAATTCAGGTGCCAATATTGCAAGCGAGTATTCGCTAACTCCCAGGCCTTAGGGGGTCACCAAAATGCTCACAAGAAAGAACGCCAGAGAGCAAGGCGTTTCCAAATCCAGAATGACCATAGCCATAGCCAAAGGCGCTCTATACCCTCTGCACAAGTAACACTTCTACCCTCAAGTATTTACTTACAAGCCTCTGCTGCCAATAATCATGTACCCACTTTTCATCCTCATCAACAATTGCTAAAGCACTTCCCATCAGGGCCCATTTTGATTCCTTCTTCAACTCCTTTTCAGCTTTATGTCTCACCCACTCAAACTCAACTGCAATCTCCTCCTCCTATTGTCACTCAATTTTCTCCGGAGAGGAATGTTGATGTCCATCTCAAATTGTCTCTCTCAAATTGA 552 0.4293 MAAEDLHSFISNKGSMSDYIHSSTPKLFGFPLTEQDEFPERKYDVEEDRKFRCQYCKRVFANSQALGGHQNAHKKERQRARRFQIQNDHSHSQRRSIPSAQVTLLPSSIYLQASAANNHVPTFHPHQQLLKHFPSGPILIPSSTPFQLYVSPTQTQLQSPPPIVTQFSPERNVDVHLKLSLSN 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi182g00068 183 PANTHER ZINC FINGER PROTEIN 5 17 181 IPR044299 GO:0010090
Sebi182g00068 183 ProSiteProfiles Zinc finger C2H2 type domain profile. 51 78 IPR013087 -
Sebi182g00068 183 FunFam Zinc finger protein 6 39 106 - -
Sebi182g00068 183 Pfam C2H2-type zinc finger 51 76 - -
Sebi182g00068 183 Gene3D Classic Zinc Finger 37 105 - -
Sebi182g00068 183 ProSitePatterns Zinc finger C2H2 type domain signature. 53 73 IPR013087 -
Sebi182g00068 183 SUPERFAMILY beta-beta-alpha zinc fingers 48 78 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi182g00068 Sebi-Chr182 795917 796468 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi182g00068 22 85 C2H2 Transcription Factor Family AT1G67030 50.704 1.55e-15 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi182g00068 zf-C2H2_6 5.1e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi182g00068 - - aprc:113861015 179.874