Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi182g00054 ATGGAAGCAACCCAACAAGCTGAGCGAAAGAGTATGAATAAGAGCCTTGCTTTAGCAAGTGCCAGCCATGATGTTCGCAATGCACTGGCAGGCCTAACTGGTTTGATAGAGATGTCAGATCAGGAAGTTGTCCATGGTTCAAAATTACACACCAACTTAAGACTCATGCATTCTTGTACCAAAGATTTACTAGGGCTCTTGAATTCTATACTTGATGCAAGCAAAATCGAAGCAGGCAAAATGCAGCTTGAGGAAGAGGAATTTGATCTATTCCAATTCCTAGAAGATGTAGTTGATTTCTACCATCCTGTGGCTATGGAGAAAAGAGTAGATCTTATTTTGGACCCTTGCAATGGATCCCTACTAAGATGTTCACAAGTGAAAGGTGACAGAGGAAAGCTTAAACAAGTTTTAAGCAATTTAGTGAACAATGCTGTTAAATTTACTAATGAGGGGCACATAGCAGTTCGAGCATGGGCTCAGAAGCCTACCTTGAAGAGCTCTAGAGTTGCTACTAATCGATACAGCTTCATCAAGAGACTTTTGTCACGCTTACTGCATAGGAAAAATGAATCACATGATGATGTGGAAGCTGTGAATTCAATCCAACAAGATCCAAGTTGTATGGATTTTACGTTTGAAGTGGTTGATACAGGCATAGGAATTCCTAAAGAGAAGTACAAGTCTGTTTTTGAGAATTATGTCCAAGTTAAAGGAACTGCTCCTAGCCAACAACAACAAGGAACTGGCTTGGGACTTGGTATTGTCCAGTCATTGGTACGTTTGATGCATGGAGATATTGGAATTGTGGAGAAGGATATTGGTGAAAAAGGAACCTGCTTTAGGTTCAATGTGCTTCTCACTGTATGTGAGACAGGGAGTGGTGGTGGTAGAAGCACAATAAAGGGTCAATTTGGATCAACAATAAAGAGTCCCATGTTACCTGCTTATAGTCCTAGACCAGAGGTATCTGGAGTTGTTCTTTTGATTCAAGATGAGGAGCGCCAAAGGATTACTCAAAGGTTCATAGAGAGCTTATGGATCAAAGTTAAGGTTGTGAAGGATTGGAGACACCTGCCTGAAACTCTCATGATGATCAAACAAAAAGGGTTTGATTCCAATAGTTTAAGTCCTCCAAGGTCTCCAGAGTTGAGTTTTATGTCTTTATCTCGTGATAACTCTAGTAGCAGAGGTAAAGGAGTCTCTTTGAGTGCTATGGATGGAACTGACTATATAAATTCATTCCATAGTGATATTGAAGCTACCCTTGGTTTCTACCTGCTTGTGATTGATGCTACTCCAGAGCAAATTTCAGAACTTTCTTGGGTGGTATCTGATTTCAAAAGAGACCTTTCCAATCCTTATAGGGTTGTTTGGTTAGAAAATCCACTCATGAAGGATGGTGTTAATTCCAGAAACTTTGAAGAGTATCTTTCTAATTCAAATGACATTGTCTTATCCAAACCATTTCATGGTAGTAGATTACTCCAAGTTATAAGGCTTCTTCCAGAGTATGGTGGTGATTGGCAATGCAGTTCTAGTGGAGGAAAGAGAGAAACAAGGTCTCATGTTTCCCCAACAATTGAATATGGCAGTTCAAGTGGTTGTAAGGAAACACAGGAATCCTTTGGACATCAACCTTATGATATGTCTAAAGCAGGAAAATTTGTGGTTCATGAAGGAGAAATAGAAGAATGTGAAGACACAAGCAATGGCAAACCCTTGAGTGATATGAAAATTCTGGTTGTTGATGACCAGGTAATATTACGAAGGATAGCTAAGGCTAATCTTGAATCACTTGGTGCTTCTATGGAGGAATGTGAGAATGGAGAACAAGCTGTGTGGCTAGTTAGAGAGGGTCTGAATCCCAAACCTCCATTTGATTGTATCTTAATGGACTGCCAGATGCCAGTAATGGGTGGATACGAGGCAACAAGGCAGATAAGGGAAATGGAGAGGCCCTATGGTGTTCACATTCCTATCATTGCATTAACTGCAAATACAGGGGATGAAGCAAAATTGTCAATAGAAGCTGGAATGGATGGTCACTTGGAAAAACCCATCAACAAAGAGAAACTACTTGAAGCCATCAGTAACGTATGTATTAAAGAGTGA 2115 0.4019 MEATQQAERKSMNKSLALASASHDVRNALAGLTGLIEMSDQEVVHGSKLHTNLRLMHSCTKDLLGLLNSILDASKIEAGKMQLEEEEFDLFQFLEDVVDFYHPVAMEKRVDLILDPCNGSLLRCSQVKGDRGKLKQVLSNLVNNAVKFTNEGHIAVRAWAQKPTLKSSRVATNRYSFIKRLLSRLLHRKNESHDDVEAVNSIQQDPSCMDFTFEVVDTGIGIPKEKYKSVFENYVQVKGTAPSQQQQGTGLGLGIVQSLVRLMHGDIGIVEKDIGEKGTCFRFNVLLTVCETGSGGGRSTIKGQFGSTIKSPMLPAYSPRPEVSGVVLLIQDEERQRITQRFIESLWIKVKVVKDWRHLPETLMMIKQKGFDSNSLSPPRSPELSFMSLSRDNSSSRGKGVSLSAMDGTDYINSFHSDIEATLGFYLLVIDATPEQISELSWVVSDFKRDLSNPYRVVWLENPLMKDGVNSRNFEEYLSNSNDIVLSKPFHGSRLLQVIRLLPEYGGDWQCSSSGGKRETRSHVSPTIEYGSSSGCKETQESFGHQPYDMSKAGKFVVHEGEIEECEDTSNGKPLSDMKILVVDDQVILRRIAKANLESLGASMEECENGEQAVWLVREGLNPKPPFDCILMDCQMPVMGGYEATRQIREMERPYGVHIPIIALTANTGDEAKLSIEAGMDGHLEKPINKEKLLEAISNVCIKE 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi182g00054 704 ProSiteProfiles Response regulatory domain profile. 579 701 IPR001789 GO:0000160
Sebi182g00054 704 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 68 284 IPR036890 -
Sebi182g00054 704 Gene3D - 81 293 IPR036890 -
Sebi182g00054 704 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 129 287 IPR003594 -
Sebi182g00054 704 CDD REC_hyHK_CKI1_RcsC-like 580 697 - -
Sebi182g00054 704 SMART HisKA_10 13 79 IPR003661 GO:0000155|GO:0007165
Sebi182g00054 704 PRINTS Bacterial sensor protein C-terminal signature 229 239 IPR004358 GO:0016310|GO:0016772
Sebi182g00054 704 PRINTS Bacterial sensor protein C-terminal signature 247 265 IPR004358 GO:0016310|GO:0016772
Sebi182g00054 704 PRINTS Bacterial sensor protein C-terminal signature 211 225 IPR004358 GO:0016310|GO:0016772
Sebi182g00054 704 Pfam Response regulator receiver domain 580 697 IPR001789 GO:0000160
Sebi182g00054 704 MobiDBLite consensus disorder prediction 372 400 - -
Sebi182g00054 704 ProSiteProfiles Histidine kinase domain profile. 20 289 IPR005467 -
Sebi182g00054 704 MobiDBLite consensus disorder prediction 513 536 - -
Sebi182g00054 704 Gene3D - 558 701 - -
Sebi182g00054 704 Pfam His Kinase A (phospho-acceptor) domain 15 79 IPR003661 GO:0000155|GO:0007165
Sebi182g00054 704 SUPERFAMILY CheY-like 574 700 IPR011006 -
Sebi182g00054 704 SMART HKATPase_4 129 289 IPR003594 -
Sebi182g00054 704 Gene3D - 1 80 - -
Sebi182g00054 704 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 2 81 IPR036097 GO:0000155|GO:0007165
Sebi182g00054 704 SMART REC_2 578 697 IPR001789 GO:0000160
Sebi182g00054 704 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 698 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi182g00054 Sebi-Chr182 605659 609449 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi182g00054 1 690 Histidine Kinase Gene Family AT2G47430 42.688 1.24e-168 512
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sebi182g00054 HATPase_c 1.1e-25 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi182g00054 - - gmx:100790376 795.423