Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi182g00033 ATGTCATTGAAAAGCATAGTTCGTGAACTTAAGGAGATGAGAGATGGAATAGGTAGCATATCAAAGCGAGGTGTAGAAAGCAGGCATTGGCTGGGTAGGACAAAGTCACACGTTGCTCCTGATGTCCTTGTAACTCCATTTGAACCTATTCAACAGGGACAGTGGGCAAATTTACCACCAGAATTGCTTTTGGACATAATTCGGAGAGTTGAAGAGAGTGAGACTTCTTGGCCTGCGAGGGCTGTTGTTGTTTTTTGTGCTTCAGTATGTAAATCATGGAGGTCCATTGCAAAAGAGATTGTCAAGACTCCTGAACAATGTGGAAGGATCACTTTTCCTATTTCGTTGAAGCAGTCGGGTCCTCGTGATTCTCCAATACAGTGCTTTATCAGGAGGAACAGAGAAACTTCTACATATATATTGTACTTTGGTCTGGCGCCATTTGGATGTGATTTCCTATCAGATCTCATCATTTTCACAACTCCATTCTCAGATGTATTACTCACAGAGAATGAGAGTAATAAGTTGTTATTAGCTGCCAAAAGGACAAGAAGGGCAACAGGCACCAACTTTATCATATCCTTGGCTGCAAATGATTTTTCTCGAGCCAGCAACAAATATGTTGGTAAACTGAGGCAAGTTTTGGTCTTCACTATACACGACAGTCAACCTCCACGTGATGCTACTATTCAACCAAATTGTCCATCGAGTAGGAGATTTAATTCTAAGCAGGTGTCACCAAGAGTTCCAGCATGTAACTATCTTGTTGGCACCGTTTCCTATGAGCTGAATGTTCTCTGCACTAGAGGGCCTAGAAAAATGCACTGCATCATGAACTCCATACCTGTCTCAGCTATTCAGGAAGGAGGCAATGCCCCAACTTCACAATCTTCCCCTCAGATATTCGATGAACCTTTTTCTCCCTCACCAGCACTAAAAGGCAAAGGTACAACTACAGATTTAAACTCTGCAAGCCCACCAGAACTAGCAGTATTGAGCCAAGGCTCAGTTGAGCCTTTGGTACTAAAAAACAAGGCTCCCAGATGGCATGAGCAGCTACAGTGCTGGTGCCTAAACTTCAAGGGTCGTGTTACAGTGGCTTCTGTTAAGAACTTTCAACTTGTAGCTGCTGTTGATCCATCTCATAATGTTTCTGCTGCAGAGCAAGAAAGGGTAATCTTGCAGTTTGGAAAGATTGGAAAAGACATATTTACCATGGATTACTGTTATCCACTCTCTGCCTTTCAAGCCTTTGCCATCTGCTTGAGCAGCTTTGATACTAAACCAGCCTGTGAATGA 1299 0.4288 MSLKSIVRELKEMRDGIGSISKRGVESRHWLGRTKSHVAPDVLVTPFEPIQQGQWANLPPELLLDIIRRVEESETSWPARAVVVFCASVCKSWRSIAKEIVKTPEQCGRITFPISLKQSGPRDSPIQCFIRRNRETSTYILYFGLAPFGCDFLSDLIIFTTPFSDVLLTENESNKLLLAAKRTRRATGTNFIISLAANDFSRASNKYVGKLRQVLVFTIHDSQPPRDATIQPNCPSSRRFNSKQVSPRVPACNYLVGTVSYELNVLCTRGPRKMHCIMNSIPVSAIQEGGNAPTSQSSPQIFDEPFSPSPALKGKGTTTDLNSASPPELAVLSQGSVEPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPSHNVSAAEQERVILQFGKIGKDIFTMDYCYPLSAFQAFAICLSSFDTKPACE 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi182g00033 432 ProSitePatterns Tub family signature 2. 417 432 IPR018066 -
Sebi182g00033 432 MobiDBLite consensus disorder prediction 288 325 - -
Sebi182g00033 432 CDD F-box_AtTLP-like 55 99 - -
Sebi182g00033 432 SUPERFAMILY Tubby C-terminal domain-like 104 432 IPR025659 -
Sebi182g00033 432 Pfam F-box domain 55 102 IPR001810 GO:0005515
Sebi182g00033 432 Gene3D Tubby Protein; Chain A 115 426 IPR025659 -
Sebi182g00033 432 MobiDBLite consensus disorder prediction 288 304 - -
Sebi182g00033 432 PANTHER TUBBY-RELATED 49 430 - -
Sebi182g00033 432 Gene3D - 48 101 - -
Sebi182g00033 432 Pfam Tub family 116 427 IPR000007 -
Sebi182g00033 432 ProSitePatterns Tub family signature 1. 360 373 IPR018066 -
Sebi182g00033 432 PRINTS Tubby superfamily signature 389 408 IPR000007 -
Sebi182g00033 432 PRINTS Tubby superfamily signature 191 207 IPR000007 -
Sebi182g00033 432 PRINTS Tubby superfamily signature 342 359 IPR000007 -
Sebi182g00033 432 PRINTS Tubby superfamily signature 253 280 IPR000007 -
Sebi182g00033 432 PRINTS Tubby superfamily signature 360 376 IPR000007 -
Sebi182g00033 432 PRINTS Tubby superfamily signature 410 432 IPR000007 -
Sebi182g00033 432 SUPERFAMILY F-box domain 50 99 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi182g00033 Sebi-Chr182 336097 338077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi182g00033 1 432 TUB Transcription Factor Family AT2G18280 59.862 8.10e-172 485
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Sebi182g00033 Tub 2.3e-93 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi182g00033 K19600 - gmx:100805380 704.131