Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi182g00007 ATGAGTTGTTTCAGCTGTTGTGAAGAAGATGACTTCCACAAGACTGCTGAAAGTGGAGGACCATATGTGGTGAAAAACTCAGGAAATGATGGAAATCATCATGCTTCTGAAACTGCAAAGCAGGGTGCTCAAACTGTTAAAATTCAGCCCATTGAAGTTCCTGAAATACCAGTGGAAGAACTCAAAGAAATTACAGATAGCTTTGGAGAAAGTTCTCTGATTGGAGAGGGATCCTATGGAAGAGTATATTATGGTGTTCTTAAAAGTGGGCAGGCTGCAGCAATCAAGAAATTAGATGCCAGTAAACAGCCTGATGATGAATTTTTAGCCCAGGTTTCAATGGTTTCACGGCTGAAGCATGACAATTTTGTTCAATTGCTTGGTTATTGCGTTGATGGAAACTCACGAGTTCTTGCTTATGAGTTTGCATCCAATGGGTCTCTTCATGATATTTTACATGGCAGAAAAGGTGTTAAAGGAGCACAGCCTGGTCCTGTTCTGACATGGGCACAGAGGGTTAAAATTGCTGTAGGGGCTGCGAAAGGGCTTGAGTACTTGCATGAGAAGGCTGATCCCCACATTATCCACCGGGACATCAAGTCAAGCAATGTACTAATCTTTGATGATGATGTTGCTAAAATTGCAGATTTTGATTTGTCAAATCAGGCTCCTGACATGGCAGCACGTCTTCATTCCACCCGTGTCCTTGGGACCTTTGGTTATCATGCACCAGAATATGCAATGACTGGGCAATTGAATGCTAAGAGCGATGTATACAGTTTTGGTGTTGTCCTTCTGGAACTTTTGACTGGAAGGAAGCCTGTTGATCACACACTACCACGTGGGCAGCAGAGCCTGGTTACTTGGGCTACACCAAAACTCAGTGAGGATAAAGTCAGACAGTGTGTAGATGCAAGACTAGGAGGAGAGTACCCGCCCAAAGCTGTTGCTAAGCTGGCCGCTGTTGCTGCTCTATGCGTGCAATATGAAGCTGATTTCAGGCCAAACATGAGCATTGTAGTCAAAGCTCTTCAGCCTTTGTTGAATGCAAGACATGGACCTGCTGGTGAAACACCAAACTAA 1083 0.4404 MSCFSCCEEDDFHKTAESGGPYVVKNSGNDGNHHASETAKQGAQTVKIQPIEVPEIPVEELKEITDSFGESSLIGEGSYGRVYYGVLKSGQAAAIKKLDASKQPDDEFLAQVSMVSRLKHDNFVQLLGYCVDGNSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLTWAQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVRQCVDARLGGEYPPKAVAKLAAVAALCVQYEADFRPNMSIVVKALQPLLNARHGPAGETPN 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi182g00007 360 PIRSF ILK 14 352 - -
Sebi182g00007 360 Pfam Protein tyrosine and serine/threonine kinase 73 344 IPR001245 GO:0004672|GO:0006468
Sebi182g00007 360 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 4 351 - -
Sebi182g00007 360 MobiDBLite consensus disorder prediction 29 44 - -
Sebi182g00007 360 SUPERFAMILY Protein kinase-like (PK-like) 47 344 IPR011009 -
Sebi182g00007 360 MobiDBLite consensus disorder prediction 17 44 - -
Sebi182g00007 360 ProSiteProfiles Protein kinase domain profile. 68 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi182g00007 360 ProSitePatterns Protein kinases ATP-binding region signature. 74 97 IPR017441 GO:0005524
Sebi182g00007 360 FunFam pto-interacting protein 1 144 355 - -
Sebi182g00007 360 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Sebi182g00007 360 FunFam PTI1-like tyrosine-protein kinase 3 32 142 - -
Sebi182g00007 360 CDD STKc_IRAK 74 347 - -
Sebi182g00007 360 SMART serkin_6 68 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi182g00007 360 Gene3D Phosphorylase Kinase; domain 1 28 142 - -
Sebi182g00007 360 Gene3D Transferase(Phosphotransferase) domain 1 143 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi182g00007 Sebi-Chr182 49116 51654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi182g00007 59 352 Receptor kinase-like Gene Family AT3G58690 50.000 1.29e-90 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Sebi182g00007 PK_Tyr_Ser-Thr 3.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi182g00007 K13436 - gmx:100499642 659.448