Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi180g00115 ATGAAGGAGATGATGTACAAGATTGCAGTGATGCAGCCAGTGGACATAGACCCAGCCACCATCAGGAAACCAAAGAGAAGAAACGTTAGAATCAGTGATGACCCTCAGAGTGTGGCTGCAAGGCATAGGAGAGAGAGGATCAGTGAGAAAATGCGCATCCTTCAAAGACTCGTACCTGGTGGAACCAAAATGGACACTGCTTCTATGCTTGATGAAGCCATTCTCTATGTCAAGTTCTTGAAGAGACAAATCAGGTTGCTTCAATCAACTCCTCCTACAATTACTCCTTTATTAGCCCCTTCTTGTGATTGGCCTTTTTCACCAAATGTATCTATACTCACTTCCACAACCGCCATGGTCATGGACTTGCTGCCGGAGGACATGGCCAGCCTTGTGATGCCTCCTCCACCTTGTGAGAGGTAA 423 0.4657 MKEMMYKIAVMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKMRILQRLVPGGTKMDTASMLDEAILYVKFLKRQIRLLQSTPPTITPLLAPSCDWPFSPNVSILTSTTAMVMDLLPEDMASLVMPPPPCER 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi180g00115 140 FunFam BHLH transcription factor 34 95 - -
Sebi180g00115 140 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 36 90 IPR036638 GO:0046983
Sebi180g00115 140 CDD bHLH_AtIND_like 32 89 - -
Sebi180g00115 140 Gene3D - 34 94 IPR036638 GO:0046983
Sebi180g00115 140 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 31 80 IPR011598 GO:0046983
Sebi180g00115 140 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 108 IPR045843 GO:0003700|GO:0006355
Sebi180g00115 140 Pfam Helix-loop-helix DNA-binding domain 41 80 IPR011598 GO:0046983
Sebi180g00115 140 SMART finulus 37 86 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi180g00115 Sebi-Chr180 1284255 1284677 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi180g00115 1 101 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 74.257 1.53e-47 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi180g00115 HLH 1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi180g00115 - - gmx:100775296 195.282