Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi180g00114 ATGAAGGAGATGATGTACAAGATTGCAGTGATGCAGCCAGTGGACATAGACCCAGCCACCATCAGGAAACCAAAGAGAAGAAACGTTAGAATCAGTGATGACCCTCAGAGTGTGGCTGCAAGGCATAGGAGAGAGAGGATCAGTGAGAAAATGCGCATCCTTCAAAGACTCGTACCTGGTGGAACCAAAATGGACACTGCTTCTATGCTTGATGAAGCCATTCTCTATGTCAAGTTCTTGAAGAGACAAATCAGGTTGCTTCAATCAACTCCTCCTACAATTACTCCTTTATTAGCCCCTTCTTGTGATTGGCCTTTTTCACCAAATGTATTACCCGGAGGACATGGCTAG 351 0.4501 MKEMMYKIAVMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKMRILQRLVPGGTKMDTASMLDEAILYVKFLKRQIRLLQSTPPTITPLLAPSCDWPFSPNVLPGGHG 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi180g00114 116 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 95 IPR045843 GO:0003700|GO:0006355
Sebi180g00114 116 CDD bHLH_AtIND_like 32 89 - -
Sebi180g00114 116 Pfam Helix-loop-helix DNA-binding domain 41 80 IPR011598 GO:0046983
Sebi180g00114 116 Gene3D - 34 94 IPR036638 GO:0046983
Sebi180g00114 116 FunFam BHLH transcription factor 34 95 - -
Sebi180g00114 116 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 31 80 IPR011598 GO:0046983
Sebi180g00114 116 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 36 90 IPR036638 GO:0046983
Sebi180g00114 116 SMART finulus 37 86 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi180g00114 Sebi-Chr180 1276909 1277259 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi180g00114 1 101 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 74.257 1.57e-47 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi180g00114 HLH 6.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi180g00114 - - gmx:100775296 197.593