Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi180g00113 ATGGCAGAAAGCTCTCTTCAAATTGATTTGATGGACGGACCTGAATTTGCACCCAGTATTGCTAGTATCAGTAGTTCAAAGTCGTCCTATTTGGAAAGAAGTGGTAAGTTAAAACCCAGAATGGAATTCTCATCCAAGGAACCATTTCCTGGAGGCAGAGGTTCAAATAATGATGATGTTACGAATAAAGACTACAGAGTTTTGGATGCAACAGTTGCATGGGAAACTGATGGAAGTTGCAGCAGGTCAGTCAGGAGTAGCAGGAGCCGGAGCCCTCCACATGGTTTTATGTGGGATTTAGGAGTCAATGACAAAAATAAAGCAAGTGCTGGACGATTTACACAACCATGTAGAAATTTTGCTGCTGGGAAATGCAGAAGTGGCAGCCATTGTCATTTCCTTCACCTTGGTAATCAAAATTTTGAGGATAGTTGGGAAAGTAGACACAGACAAGATGGAGCTCCTAGATATTCTGCTGTCCATGAGAGTGGGGACTATTCTCTTACAAGTGGAAGATCTGATGAAGCTTGTATTAATTTTTTGAAAGGAAGATGTAGAATGGGAGCATCATGCAAGTATGTGCATCATGATAATTCTGATGGGTTTGGTAAAGTTTCTGCAGATGAATCATCTAGGGATTGGGTAATTAATAGAAGACACATGGAGAATTCTTTCGAGCAGGGTGGTTGGCATTATCCAAACCACATTGGTGATACTCCTTGCAAATTTTTTGCTTCTGGGAATTGTCGTAATGGTAAACATTGTAGGTTTTCTCATGATAGACAAGCATGTAGGAGCCCTAATAGAAGATTAAGTGATGATACGACAAGGATTAATCAAGGTGGAGATCAGGTATTGGATAGACCAAAATTGAGTGATTCTGATACTCCTAATGGAAGGATAAGAGATGATAGATGGTGTTCAGATGGCAGTATGGCTGCTGTAGATAAAGTTTGGGATGGTCCAAACAAGAATCATTTAGTTGCTGTCTTTGATACTGCAAAACTGGTTGAGGACAACAAAAATGGAGTTATGAGCTTCACTGCTTGGCCAATGAGTGATGGGTGGGGCCGTAACTTAGACAAGAACAGAGTGCATGGTGAGTTGCCATTTTCAAGTTATAAGAAGGAAGCCAACTGTTGGACAGCAGAAAATGCAATTGACAACATTCGCATTTCCCAATCAGTAGATAGAAGCATTTGGCCTGGTGATGAAAAAATGTCTCCTGATTGGAATTATGGTGAGCGATCTTCCAGCCGTATTAAAGAAGAGCACAGGCAGAATAAGCAACAAGTTTCTCCAGGACAAGGATATAATCATGCTGCTCGAAATGTAAATGCTTTGCATTCTTCAAGCTATCATGGTGTTGTACAGAGTCATGTGTTGCGTGCAATTGCTCTTCCAAGACTAAGAAATGAAGGTATGCAGACCCAGGAAGTCTCTACTGAGAAAAGGTATACTGTTGAGTCAATTGCAAGCCTATCACAAGTTGGTTCAAGAAATTATCCAACTCACAACATGGTTAGCAAAGAACAGCTTGCTCAACTTACCTGCCTCTCAGCTTCTCTGGCACATTTCCTTGGAGCAGGTAGGCAGCTCCTGCAACTTAATGCTTCTTCAAGCCCTCATGATACAAAGGGCTTACCCTCTGTTGACCAAACTGAAGGGTCTGGTGATCCAATGTCTGATAGTATGGAGACAAGTGGGGTCCCCCAAACCTTTTCACCTATTGAAAATGTTCCAAACGATGCAGTAGAAATTCCATCACTGTTATCTAACTCGGGACAAAATTTTGATGATTTTTGTAAGACAGCATTTTCATCAAAACTTGTCAAGAGTGAAAATGAAATGGCCGCTGAAGAGAATGATCCTTTGGAAGACATGGACAAAAGTGGTGGACCTGATGAGGCCAACAAAATAAAGGATGTGAAGGGGATTCGTGCATTTAAATTTTCATTAGTGGAGTACATTAAGGAGCTTCTGAAACCAACATGGAAAGAAGGTCAAATCACCAAAGAAGATTATAAAGCAATTGTGAAGAAAGTTACTGATAAAGTAACTGGTTCAGTGCAGCGGGAACATATTCCTCAGACACAAGACAAAATTGACCGCTATTTATCATTTTCGAAACCAAAGCTTAACAAACTTGTACAGGTCAGTGGTGGCTCTCTCACAGATTTCCGTCATGTGTATGGTGGATTCAAACTTTTGTCACCCATTTAA 2223 0.408 MAESSLQIDLMDGPEFAPSIASISSSKSSYLERSGKLKPRMEFSSKEPFPGGRGSNNDDVTNKDYRVLDATVAWETDGSCSRSVRSSRSRSPPHGFMWDLGVNDKNKASAGRFTQPCRNFAAGKCRSGSHCHFLHLGNQNFEDSWESRHRQDGAPRYSAVHESGDYSLTSGRSDEACINFLKGRCRMGASCKYVHHDNSDGFGKVSADESSRDWVINRRHMENSFEQGGWHYPNHIGDTPCKFFASGNCRNGKHCRFSHDRQACRSPNRRLSDDTTRINQGGDQVLDRPKLSDSDTPNGRIRDDRWCSDGSMAAVDKVWDGPNKNHLVAVFDTAKLVEDNKNGVMSFTAWPMSDGWGRNLDKNRVHGELPFSSYKKEANCWTAENAIDNIRISQSVDRSIWPGDEKMSPDWNYGERSSSRIKEEHRQNKQQVSPGQGYNHAARNVNALHSSSYHGVVQSHVLRAIALPRLRNEGMQTQEVSTEKRYTVESIASLSQVGSRNYPTHNMVSKEQLAQLTCLSASLAHFLGAGRQLLQLNASSSPHDTKGLPSVDQTEGSGDPMSDSMETSGVPQTFSPIENVPNDAVEIPSLLSNSGQNFDDFCKTAFSSKLVKSENEMAAEENDPLEDMDKSGGPDEANKIKDVKGIRAFKFSLVEYIKELLKPTWKEGQITKEDYKAIVKKVTDKVTGSVQREHIPQTQDKIDRYLSFSKPKLNKLVQVSGGSLTDFRHVYGGFKLLSPI 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi180g00113 740 MobiDBLite consensus disorder prediction 288 303 - -
Sebi180g00113 740 SUPERFAMILY CCCH zinc finger 238 260 IPR036855 GO:0046872
Sebi180g00113 740 MobiDBLite consensus disorder prediction 539 579 - -
Sebi180g00113 740 MobiDBLite consensus disorder prediction 265 303 - -
Sebi180g00113 740 ProSiteProfiles Zinc finger C3H1-type profile. 240 262 IPR000571 GO:0046872
Sebi180g00113 740 MobiDBLite consensus disorder prediction 614 637 - -
Sebi180g00113 740 Pfam RNA-binding, Nab2-type zinc finger 116 135 - -
Sebi180g00113 740 Pfam RNA-binding, Nab2-type zinc finger 176 195 - -
Sebi180g00113 740 SMART c3hfinal6 112 137 IPR000571 GO:0046872
Sebi180g00113 740 SMART c3hfinal6 171 197 IPR000571 GO:0046872
Sebi180g00113 740 SMART c3hfinal6 235 261 IPR000571 GO:0046872
Sebi180g00113 740 Gene3D - 234 309 - -
Sebi180g00113 740 MobiDBLite consensus disorder prediction 25 62 - -
Sebi180g00113 740 Pfam CCCH-type zinc finger 240 260 IPR041367 -
Sebi180g00113 740 MobiDBLite consensus disorder prediction 401 437 - -
Sebi180g00113 740 Gene3D - 107 206 - -
Sebi180g00113 740 ProSiteProfiles Zinc finger C3H1-type profile. 171 198 IPR000571 GO:0046872
Sebi180g00113 740 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 21 718 - -
Sebi180g00113 740 ProSiteProfiles Zinc finger C3H1-type profile. 111 138 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi180g00113 Sebi-Chr180 1259771 1263008 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sebi180g00113 zf-CCCH_4 5.4e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi180g00113 - K22909 gmx:100783856 796.964