Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi180g00107 ATGCTGAGCTCTGATGATGGAGATATTGATGTATTCTTTGACTCAGTGGATAGTTTGTCAGCTCAAGATTCTGTTTTAGCTAAAGAAGAGTTTGGTTATGGAGGGTGTGGCTGTGATTATGATGAGATTTGGGTGAAGGAGCCTGTTAGTGTGAAGGAGAGACGGGAACGTTTCCTGCAGGGTATGGGTTTAGCTGATACTTCTTCTAAGGTTTGTTCACAGGAGAAAATGATGAGCTTTGATGACTCATCCATCAGCTTGGGACTTGAGAGGATCACGGAATGCAGTGGAGCAGTCTCAAATGCTTGCATTTCGCATACGGATCAAGTATCTGACAAGTTGGTTCTCTCTGGAAGGAAAGCAGCTTCTGAAGCAGAAGTTTTGTTCGATGAAGCAGATGCGAGTTTTCAAGGGAAAGTGAATGAGCTCTCTTCTACAACACAGGAGCACAGACACAGAGAAGCTGAGGCTCAAGAAGAATTTCAGGATTTTGACATACGTAAACATAAAAGGAAAAATTGGTGGAAGCACTTTGTAAACATCAGGAAAGGTGATGAAGGAAAAGCCAGATCAAAATTGAATACAGGGACAAATAAAACTCGTAGGATAAAGGTAAGGCAGAATAAAAAGAGGTGGCTGGAGTTCAGTGGGCTATACATTGGACAAGAGATTAGAGCACACAAAGGCCTAATTTGGACTATGAAATTTAGTCCCAATGGTAAGTATGTAGCTAGTGGAGGTGAAGATGGTGTTGTGCGCGTATGGCGTGTTACATCACTGGATACATCCAGTATTTGTTTCACCACAGAAGGCAGTGCAGCTAGTAGAAAAGTGAAACTTGGCAACTCTTTTCATTGGAAGAAACACTCGAGCCAACCCTTCATTTTCCTCCCAAATAGTATTTTTCAAATTGAAGAATCACCACTGCAAGAATTCTTTGGTCATTCCAGTGATGTCTTGGATTTGGCTTGGTCTAATTCAGATATTCTCCTCTCATCTTCTATGGATAAAACTGTTCGCTTGTGGCAAATTGATTGTAATCAAAGTCTACATGTTTTCCATCACAATGACTATGTGACATGCATTCAGTTCAACCCTGTTGATGAAAATTACTTCATCAGTGGGTCAATTGATGGTAAAGTTCGAATTTGGGGGATACATGAAGAGCGAGTTATTGACTGGGCAGATATACGAGATGTCATAAGTGCTATAAGTTACCAGCAAGATGGGAAAGGTTTTGTAGTTGGTTCTGTTACTGGCACTTGTCATTTTTATGTTGCTTCAGGAAAATATTTCCAGCTTGAGGCGCAGATAGATGTCCATGGAAAGAAGAAAGCATCAGGCAACAAGATTACTGGCATTCAGTTCTCCCAGAAAAACTGTCAGAAAATTATGATCACATCAGAAGATTCCAAAATTCGCATATTGGATGGCATTGAGCTTGTTCAGAAATACAGAGGCCTTCCTAAGTCTGGAAGCCAGATGTCTGCTTCATTTACATCAAGTGGAAAACATATAATTTCAGTTGGAGAGGACTCACGTGTGTATATTTGGAACCACAATGACTTGACAAATGCCTCTTCCAAACAAACAAAATCTGAGTGTTCCTGTGAGTACTTTTTCTCCAAGGGTGTTACTGTTGCAATACCTTGGTCAGAAACACAAACCCCAGAAGCAGTTGTTCCCGAGGTTAGAGATTCAGAACGTTTTTCTCTTGGTAATTGGTTCTCCATTGATGGTACAAACCGAGGTTCTATGACATGGCCTGAGGAGAAACTTCCTAGCTGGGATTTACCTCTTGTAGAAAATGAATATGATCACCAGAAGTTATGTCACAGAGATACTAGCCATGAAAGAAGTGTATCAGAAACATGGGGACTATCAATTGTGGTAGCTGGTCATGATGGAACTATCAAGACATTCCACAACTTTGGATTGCCTATTAGGCTTTAG 1953 0.4081 MLSSDDGDIDVFFDSVDSLSAQDSVLAKEEFGYGGCGCDYDEIWVKEPVSVKERRERFLQGMGLADTSSKVCSQEKMMSFDDSSISLGLERITECSGAVSNACISHTDQVSDKLVLSGRKAASEAEVLFDEADASFQGKVNELSSTTQEHRHREAEAQEEFQDFDIRKHKRKNWWKHFVNIRKGDEGKARSKLNTGTNKTRRIKVRQNKKRWLEFSGLYIGQEIRAHKGLIWTMKFSPNGKYVASGGEDGVVRVWRVTSLDTSSICFTTEGSAASRKVKLGNSFHWKKHSSQPFIFLPNSIFQIEESPLQEFFGHSSDVLDLAWSNSDILLSSSMDKTVRLWQIDCNQSLHVFHHNDYVTCIQFNPVDENYFISGSIDGKVRIWGIHEERVIDWADIRDVISAISYQQDGKGFVVGSVTGTCHFYVASGKYFQLEAQIDVHGKKKASGNKITGIQFSQKNCQKIMITSEDSKIRILDGIELVQKYRGLPKSGSQMSASFTSSGKHIISVGEDSRVYIWNHNDLTNASSKQTKSECSCEYFFSKGVTVAIPWSETQTPEAVVPEVRDSERFSLGNWFSIDGTNRGSMTWPEEKLPSWDLPLVENEYDHQKLCHRDTSHERSVSETWGLSIVVAGHDGTIKTFHNFGLPIRL 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi180g00107 650 Gene3D - 123 395 IPR015943 GO:0005515
Sebi180g00107 650 ProSiteProfiles Trp-Asp (WD) repeats profile. 312 352 IPR001680 GO:0005515
Sebi180g00107 650 PANTHER WD REPEAT DOMAIN 44 7 647 IPR040324 -
Sebi180g00107 650 Gene3D - 396 644 IPR015943 GO:0005515
Sebi180g00107 650 ProSiteProfiles Trp-Asp (WD) repeats profile. 352 394 IPR001680 GO:0005515
Sebi180g00107 650 SMART WD40_4 437 477 IPR001680 GO:0005515
Sebi180g00107 650 SMART WD40_4 478 519 IPR001680 GO:0005515
Sebi180g00107 650 SMART WD40_4 217 256 IPR001680 GO:0005515
Sebi180g00107 650 SMART WD40_4 305 343 IPR001680 GO:0005515
Sebi180g00107 650 SMART WD40_4 387 426 IPR001680 GO:0005515
Sebi180g00107 650 SMART WD40_4 346 385 IPR001680 GO:0005515
Sebi180g00107 650 FunFam WD repeat-containing protein 44 208 551 - -
Sebi180g00107 650 PRINTS G protein beta WD-40 repeat signature 243 257 IPR020472 -
Sebi180g00107 650 PRINTS G protein beta WD-40 repeat signature 330 344 IPR020472 -
Sebi180g00107 650 PRINTS G protein beta WD-40 repeat signature 372 386 IPR020472 -
Sebi180g00107 650 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 312 345 - -
Sebi180g00107 650 ProSiteProfiles Trp-Asp (WD) repeats profile. 224 265 IPR001680 GO:0005515
Sebi180g00107 650 SUPERFAMILY WD40 repeat-like 219 640 IPR036322 GO:0005515
Sebi180g00107 650 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 352 384 - -
Sebi180g00107 650 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 224 259 - -
Sebi180g00107 650 Pfam WD domain, G-beta repeat 307 342 IPR001680 GO:0005515
Sebi180g00107 650 Pfam WD domain, G-beta repeat 348 384 IPR001680 GO:0005515
Sebi180g00107 650 Pfam WD domain, G-beta repeat 223 255 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi180g00107 Sebi-Chr180 1195958 1199117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi180g00107 309 516 U-box Gene Family AT2G33340 25.909 5.22e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi180g00107 K20241 - gmx:100819135 1051.2