Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi180g00106 ATGGTTAGAGACGATCTATACATCACGGTTCCCAGCTTCTTCCGGTGTCCCATATCACTTGACGTCATGAAATCCCCTGTGAGCCTCTGTACTGGCGTTACCTACGACCGTTCCAGCATCCAACGCTGGCTTGACGATGGCAATAACACCTGTCCCGCCACCATGCAGATTCTTCATAGCAAGGAGTTTGTTCCTAACCGCACCTTACAGAGGCTCATCCAGATCTGGTCTGACTCGGTTCGCCACCGAGTCGACTCATCCGAGTCAACCGCCGCTACCGAATCGGTCCTTGCTCGGGACCAACTCCTCGCCGCCATCAACGACTTGGAGGATTCCCGTAGCGAGAACCGGTTCGACTCGGTCTCGAAAATCCTTAGTTTCGCACAAGATTCCGAAGAGAACCGCGATTTTCTCGCGAGAACGGAAGGTTTCGTGCCAGTGCTTGTTGGTTTGCTCGACAATGTCGATTCCAGAGTGCAACGGAGTATTGAATTCCTCGAACTGGTTGTTAAGGCGTTGGATTTGGTTCTAAGTAAAGTAGAAAATCGCGAGGAGTTGAAGAATTTGATGCTGAAGAGCCAGGGACAAGGACAGAGTATAGATTCCGTGCTTCTTGTTCTGCAACAGGGAAGCTGCGAATCAAGGATTGCATCGGCTAGGGTTTTGAAATCCATCGCCATAGACGCGGAATCGAAGCTTTTGATAGCGGAAAAGGAAGGTCTGGTATCCGAATTGCTCAAATTAATCACGCCGGACAAAGATCCGAACCTAATCGAGAACGCCTTGTCGTGCTTGGTGGCAATCTCAACGCCGAAGCGGAACAAGGCGAAGCTGGTCCATCTAGGAGCCGTGAAGGTGTTCTCGAAACTTCTTTCGGCGTCAAATTTGAGCGTTTCGGTGGCGGAAAAGGTACTGAAACTGATCGAAACGATGTCGTCGACGAAGGAAGGGAGGGCGCAGATATGTGAGGAAGCGGAGTGCGTGGCGGCGATAGTGAACAAGGTTCTTAAAGTGTCCAGCGTGGCAACGGAGCACGCCGTAACGACGCTGTGGAGTGTGTGCTATTTGTTTAGGGATCAGAAAGCACAAGAAGCCGTAACAAAAGCCAACGGTTTAACGAAGATTCTGCTTCTGATGCAGAGTAATTGCACGCCACAAGTGCGTCAAATGTCCTCAGATTTGCTTAAAATCTTTCGGGTTAATTCTAAGTCCTGTCTTTCTTCTTATGACACGAAAACTACACATATCATGCCTTTTTAA 1260 0.4952 MVRDDLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDDGNNTCPATMQILHSKEFVPNRTLQRLIQIWSDSVRHRVDSSESTAATESVLARDQLLAAINDLEDSRSENRFDSVSKILSFAQDSEENRDFLARTEGFVPVLVGLLDNVDSRVQRSIEFLELVVKALDLVLSKVENREELKNLMLKSQGQGQSIDSVLLVLQQGSCESRIASARVLKSIAIDAESKLLIAEKEGLVSELLKLITPDKDPNLIENALSCLVAISTPKRNKAKLVHLGAVKVFSKLLSASNLSVSVAEKVLKLIETMSSTKEGRAQICEEAECVAAIVNKVLKVSSVATEHAVTTLWSVCYLFRDQKAQEAVTKANGLTKILLLMQSNCTPQVRQMSSDLLKIFRVNSKSCLSSYDTKTTHIMPF 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi180g00106 419 Gene3D - 92 407 IPR011989 -
Sebi180g00106 419 SUPERFAMILY RING/U-box 5 78 - -
Sebi180g00106 419 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Sebi180g00106 419 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Sebi180g00106 419 CDD RING-Ubox_PUB 11 63 IPR045210 -
Sebi180g00106 419 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Sebi180g00106 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 91 IPR013083 -
Sebi180g00106 419 PANTHER WDSAM1 PROTEIN 9 407 IPR045185 GO:0061630
Sebi180g00106 419 SUPERFAMILY ARM repeat 105 402 IPR016024 -
Sebi180g00106 419 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi180g00106 Sebi-Chr180 1164623 1165882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi180g00106 1 419 U-box Gene Family AT5G64660 55.738 1.71e-153 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi180g00106 - - cam:101496984 649.047