Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi180g00104 ATGAGTTTGGCGGGTACTGAAAGCTCAGAAGAGGGTGCAGGGCATTCGGAGCCTCCCGATCCTGATGTTCTTGAAATTGATCCTACTTGTCGCTACATCAAGTATAAAGAAGTGATCGGCAAAGGAGCCTTCAAAACTGTTTACAAGGCATTTGATGAAGTCAATGGAATTGAAGTTGCATGGAGCCAGGTTCAGATTGATGAAGTATTACAGTCACCAGGTGACTTAGAGAGGCTATACTCGGAAGTGCATCTCTTGAAATCACTGAGGCACAATAACATAGTAAGATTCTACAACTCCTGGATTGATGAGAAGCACAAAACTGTTAATATGATTACTGAGTTGTTTACCTCGGGAAGCCTCAAAAAGTATCGTAAAAGACACAAGAAGGTTGACATGAAGGCCATTAAAGGATGGGCAAGACAAATTTTAATGGGTTTAATCTATCTTCACAGCCACAACCCACCAGTTATACACAGGGACCTGAAATGCGATAATATATTTATCAATGGCCACCAAGGAGAAGTTAAAATTGGAGATTTGGGGCTGGCTACTTTCTTGGAGCGGACCAATGCCAAGAGTGTAATTGGAACCCCGGAGTTTATGGCGCCTGAGCTGTATGATGAAAATTACAATGAATTAGCTGACATATATTCATTTGGTATGTGCATGCTTGAGTTGGTGACTTCTGAGTATCCTTACAGTGAATGCAGAAACTCAGCACAGATATATAAGAAAGTTTCATCTGGCATAAAACCTGTTGCTCTTTCTAAAGTAATAGATCCAGAAATGAAATCACTTATTGAGAAATGTCTCGTCCCAGCATCTAAAAGATTGTCAGCAAAGGAGCTTTTGATGGACCCCTTTCTCCAAGTGAATGGTTCAACAAAGAATTGTCCTTTTCCATTGCCAGACATTGTTCTTCCCAAAGTGGGAGCCTTTGAAAGCCGATGTATGATGTCAGAAGGTCCCTCTAGTGTGAGAAATGGAGCCATTTCTACGGATGTTGATGACACCGATGAACTACCTGCGATCACTGTATTTGATAATTCTACTGGTGATGCATCACATTCTCGATGTGTTGAGATAAGAAGGTTGAAGGGAAGTGATGTCTTCTTTCTAAAAGGTGAAGAAAATGATGAGAATTCTGTATCATTAGTTCTGCGGATAGCTGATCAGAGTGGACGAGCAAGAAATATCCATTTCATATTCTACCTTGATAGTGATACTGCTGTCTCAGTTTCAAGTGAAATGGTCGAGCAACTGGAACTTGCTGATCAGAATGTTAAATTCATAGCAGAATTAATTGATTTGTTATTGATGAATCTGGTTTCTGATTGGAAACCTTGTGTAGTAATTGATCATTTAGTTTCTCCAAATGGTAAATGGACTAATGCTAGCAAAGAGGGAGTCTTGGAGTTGGCAAAAGACGAAGGAAGCTCAAAACATTCTACCAAAATTGTGTCTGTAGATGCAGGTCCCTCAACCTCCTCTGCAAGATCAGCAGCAAAAGAAAAACTTGATAATATGGATTTATGTTCTGAGATGTCATATGCTTCTGCAACATCAGACTTCAATGACAATAAGTTGTCCATAGCCTCATTCATGTCTGCTGAATCAGGATTTGATAAAGGGGGTCAATCCTCATCTCCATCTGAAAATGGGGCATCGCCTAAATATTGCAAGCTTTCGGACACGGGAAGCAACGGTATGATGAGCTTCTCTAGCTATCCCATCAGTGTTTCCTCCTTGTCTGAACCTGAAGATGAGTTGAGAATAGAGTTAGAAATGATTGAGCAGAAGTATCAAGAGGCACTTAAAGATTTATCCAAAAGAAGATACCAGGCCATCATGGATATTAAAAGGAGAATGTCAGAGAAGACGGTATCATAG 1893 0.4031 MSLAGTESSEEGAGHSEPPDPDVLEIDPTCRYIKYKEVIGKGAFKTVYKAFDEVNGIEVAWSQVQIDEVLQSPGDLERLYSEVHLLKSLRHNNIVRFYNSWIDEKHKTVNMITELFTSGSLKKYRKRHKKVDMKAIKGWARQILMGLIYLHSHNPPVIHRDLKCDNIFINGHQGEVKIGDLGLATFLERTNAKSVIGTPEFMAPELYDENYNELADIYSFGMCMLELVTSEYPYSECRNSAQIYKKVSSGIKPVALSKVIDPEMKSLIEKCLVPASKRLSAKELLMDPFLQVNGSTKNCPFPLPDIVLPKVGAFESRCMMSEGPSSVRNGAISTDVDDTDELPAITVFDNSTGDASHSRCVEIRRLKGSDVFFLKGEENDENSVSLVLRIADQSGRARNIHFIFYLDSDTAVSVSSEMVEQLELADQNVKFIAELIDLLLMNLVSDWKPCVVIDHLVSPNGKWTNASKEGVLELAKDEGSSKHSTKIVSVDAGPSTSSARSAAKEKLDNMDLCSEMSYASATSDFNDNKLSIASFMSAESGFDKGGQSSSPSENGASPKYCKLSDTGSNGMMSFSSYPISVSSLSEPEDELRIELEMIEQKYQEALKDLSKRRYQAIMDIKRRMSEKTVS 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi180g00104 630 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
Sebi180g00104 630 Gene3D - 382 450 - -
Sebi180g00104 630 SMART serkin_6 33 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi180g00104 630 MobiDBLite consensus disorder prediction 542 562 - -
Sebi180g00104 630 FunFam probable serine/threonine-protein kinase WNK9 116 295 - -
Sebi180g00104 630 Gene3D Phosphorylase Kinase; domain 1 18 114 - -
Sebi180g00104 630 SUPERFAMILY Protein kinase-like (PK-like) 35 327 IPR011009 -
Sebi180g00104 630 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 18 621 - -
Sebi180g00104 630 Coils Coil 588 608 - -
Sebi180g00104 630 FunFam Probable serine/threonine-protein kinase WNK1 18 114 - -
Sebi180g00104 630 MobiDBLite consensus disorder prediction 1 24 - -
Sebi180g00104 630 ProSiteProfiles Protein kinase domain profile. 33 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi180g00104 630 Pfam Protein kinase domain 35 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi180g00104 630 CDD STKc_WNK 31 290 - -
Sebi180g00104 630 Gene3D Transferase(Phosphotransferase) domain 1 116 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi180g00104 Sebi-Chr180 1106379 1109163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi180g00104 20 623 MAP Kinase Kinase Kinase AT5G41990 46.358 7.62e-170 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Sebi180g00104 Pkinase 4.8e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi180g00104 K08867 - gmx:121175054 865.529