Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi180g00102 ATGATGGATTATGAGCAATTTGATTACTCATTTAGCCCTCCCTATTTGAATCAACTCCATGAGTGTAGCTTAGAAAATGCATTTCCATTCCAAGTAGAAGATCCCTTATCTCCAAATACAATCCAGCTGAATGAAATGTTTAATCAAAACCAAGCAGAGGATCAATTATCTCCAAATACCATCCTAGATGAAATATTTGATCAACAGTCCATGGTGCAGCAACACACAAAGAACCAGGACTTTGATTTCATGAATCATACCCAAAAAGCCCAGGAAAATGTGCACGTTTCAAGGGAAGGAGATTCTTATTTGAAAGGGATTCAAGCAGAGCTAATGGAAGAGACTAGTTTAGCTGATCTCTTACTGACAGCAGCTGAAGCTGTTGAAGCACAGAACTGGCCTATTGCTTCAGACATAATTGAGAAACTAAACAATGTCTCATCTTTAGAAAATGGAGATAGTTTATTGAACAGGTTGGCTTCTTTTCTTTGCTCAGGTCTGTATTATAAAAGTATAAATGCTCCTGAATTGCAGTGTGTTCCTGTTTCTACACAGACAAGCACTTTCTGTGTGTTCCAGATACTTCAGGAACTTTCTCCCTATGTCAAATTTGCTCACTTCACTGCCAACCAAGCAATCCTTGAAGCTACAGAAGGTGCTGAGGATGTTCACATCATTGATTTTGACATCATGGAAGGGATCCAGTGGCCACCATTGATGGTAGACCTTGCAATGAGGAAGAGTACCAATACTTCCCTCAGAGTAACTGCCATAACAGTAGACCAGCAAAGTGCAGCCTCTGCTCAACAAACAGGAAAAGGCTTCAAGAGTTTGCAGCTTCTATCAATTTTCCATTCATATGGTGTAAGCAAATTATCTCCCAGGCTTGTTGTTTTAGTGGAAGAAGAACTGTTCAATTTTTCTAGACTCAAATCCATGTCCTTTGTGGAATTCTTCTATGAGGCTTTGCATCACTACACTGCACTTTCTGATTCACTTGCTAGTAGTATGTGGGGTAGCCACAAGATGGAGTTAAAACTGATAGAAAAAGAGGTTCTGGGGCTCAGAATCTTAGACAGTTTCTTGAGCCTGTTTGGGAAAGGATATTGGGTTCAATTCGAGAAGGGTAGGTTGGCTTTGTGTTGGAAGTCAAGGCCTTTGACTGCAGCTTCAATCTGGGTACCAACAGCTAATCTGAGTGACATGGTCAAATAG 1215 0.4041 MMDYEQFDYSFSPPYLNQLHECSLENAFPFQVEDPLSPNTIQLNEMFNQNQAEDQLSPNTILDEIFDQQSMVQQHTKNQDFDFMNHTQKAQENVHVSREGDSYLKGIQAELMEETSLADLLLTAAEAVEAQNWPIASDIIEKLNNVSSLENGDSLLNRLASFLCSGLYYKSINAPELQCVPVSTQTSTFCVFQILQELSPYVKFAHFTANQAILEATEGAEDVHIIDFDIMEGIQWPPLMVDLAMRKSTNTSLRVTAITVDQQSAASAQQTGKGFKSLQLLSIFHSYGVSKLSPRLVVLVEEELFNFSRLKSMSFVEFFYEALHHYTALSDSLASSMWGSHKMELKLIEKEVLGLRILDSFLSLFGKGYWVQFEKGRLALCWKSRPLTAASIWVPTANLSDMVK 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi180g00102 404 ProSiteProfiles GRAS family profile. 108 394 IPR005202 -
Sebi180g00102 404 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 289 359 IPR005202 -
Sebi180g00102 404 Pfam GRAS domain family 289 359 IPR005202 -
Sebi180g00102 404 Pfam GRAS domain family 118 273 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi180g00102 Sebi-Chr180 1081655 1083115 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi180g00102 117 393 GRAS Transcription Factor Family AT5G41920 28.415 4.43e-24 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Sebi180g00102 GRAS 1.3e-37 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi180g00102 - - lja:Lj0g3v0198459.1 536.569