Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi180g00085 ATGGACTTTGACGAGTACGAGTACTTGGAGAAGACAGTGGAGGAGCAGCAGCAGGAAGACAAAGATTCCTCGAAGAAGAAGAAGAGTGAGAGCACCGAAAAGAGCGAGAGGAGTTACCGGAAGCGCGACGTCGACGAAGATCTCGACGGCGAAGACAGGCGGAGCAAGAGGTCTAGGGGTGACGATGAGAATGGCTCGAAGAAGGATCGTGACAGGGAGAGAGACAGAGACCGAGACCGCTCCTCTTCCGGCCGCCACAGGGAGAGGGAGAGGGACGGAGAAAGGAGTAGCAGAGACAAAGAGAGGGATAGGGAGAAGGATAGGGATAGGGAAAGGAGAGATAGGGATAAGGATAGGGAAAAGGAACGGGAGAGAAGAGATAGAGAGAGGGAGAAGGAGCGAGAGAGAGAAAAGGAGGAGAGGGAGAGATCCAGGAGGAGCAGGAGTCGTTCCGAGAGAGATAGAGATAGAGATAGAGAAAGAGAGCGAGATTTCGAAACGCGAGATGGCAGGAGATTTAGGGATAAGAAAGAGGCTGTGGAACCTGAGGCAGATCCAGAAAGGGATCAGAGAACTGTTTTTGCCTATCAGATGCCCCTAAAAGCAACAGAGAGAGATGTATATGAGTTCTTCTCAAAAGCTGGAAAGGTGAGAGATGTCCGTCTGATCATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGGTATATTGAATTTTATGATGCGATGTCAGTGCCAATGGCAATTGCTCTCTCTGGCCAACTTCTTCTTGGGCAACCTGTTATGGTGAAACCTTCTGAGGCTGAAAAGAACCTTGTTCAATCCAATGCTACTGGTGGAGCTGCTGGTGCAACAGGACCATATGGAGCAGTGGACAGAAAATTGTATGTGGGGAATCTTCACTTCAACATGACTGAGAGTCAGCTGCGGGAGATTTTTGAGCCATTTGGTCCAGTTGAGGTTGTCCAACTGCCTCTTGACATGGAGACAGGACACTGCAAGGGTTTTGGGTTTGTTCAATTTGCCCATCTTGAACATGCCAAGGCAGCTCAGAGTTTAAATGGAAAATTAGAGATTGCTGGCAGGACTATCAAGGTTTCATCGGTAACAGATCATGTTGGGAGCCAGGATACAACTGCAAAATCTGCAGACTTGGATGATGATGAAGGTGGATTGACCTTAAATGCCCACTCAAGAGCATTGCTTATGCAAAGGCTGGCTGGCTCTGACATTCCCACAAGCATTGGTGTGCCCGCTGTGAATGGGTCAGTTCCTGTTCAGCAGGCTTTTAGCTTGCCTATTGGTAATCCAGGTATTATACCTGCGCCAGTTCTACCAACACAAGTTATGCCTACCCCAGTCGTAGAACCTGTAGGAACCCCGAGCGAGTGTTTACTATTGAAGAATATGTTTGATCCAAGCACTGAGACGGAACCAGATTTTGATATAGACATTAAAGAGGATGTAGAGGAAGAGTGTTCTAAATATGGCCGGGTGAAGCATATTTATGTCGACAAGAGAAGTGCAGGTTTTGTGTATTTACAGTTTGAAACAGTGGAAGCAGCAAGTGCTGCTCAACGAGCAATGCACATGAGATGGTTTGCACGCAGGTTAATTTCAGCTGTCTACATGGTAATCTTCTAA 1644 0.4757 MDFDEYEYLEKTVEEQQQEDKDSSKKKKSESTEKSERSYRKRDVDEDLDGEDRRSKRSRGDDENGSKKDRDRERDRDRDRSSSGRHRERERDGERSSRDKERDREKDRDRERRDRDKDREKERERRDREREKEREREKEERERSRRSRSRSERDRDRDRERERDFETRDGRRFRDKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNATGGAAGATGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDMETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGSQDTTAKSADLDDDEGGLTLNAHSRALLMQRLAGSDIPTSIGVPAVNGSVPVQQAFSLPIGNPGIIPAPVLPTQVMPTPVVEPVGTPSECLLLKNMFDPSTETEPDFDIDIKEDVEEECSKYGRVKHIYVDKRSAGFVYLQFETVEAASAAQRAMHMRWFARRLISAVYMVIF 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi180g00085 547 FunFam Splicing factor CC1-like 277 382 - -
Sebi180g00085 547 NCBIfam splicing factor, CC1-like family 68 545 IPR006509 GO:0003723|GO:0005634|GO:0006397
Sebi180g00085 547 Gene3D - 288 385 IPR012677 -
Sebi180g00085 547 SUPERFAMILY RNA-binding domain, RBD 292 370 IPR035979 GO:0003676
Sebi180g00085 547 Gene3D - 458 546 IPR012677 -
Sebi180g00085 547 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 386 481 IPR029123 -
Sebi180g00085 547 Gene3D - 117 278 IPR012677 -
Sebi180g00085 547 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 293 371 IPR000504 GO:0003723
Sebi180g00085 547 SUPERFAMILY RNA-binding domain, RBD 459 543 IPR035979 GO:0003676
Sebi180g00085 547 Coils Coil 118 154 - -
Sebi180g00085 547 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Sebi180g00085 547 CDD RRM1_RBM39_like 192 264 - -
Sebi180g00085 547 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 545 IPR006509 GO:0003723|GO:0005634|GO:0006397
Sebi180g00085 547 CDD RRM3_RBM39_like 462 544 - -
Sebi180g00085 547 SMART rrm1_1 294 367 IPR000504 GO:0003723
Sebi180g00085 547 SMART rrm1_1 464 541 IPR000504 GO:0003723
Sebi180g00085 547 SMART rrm1_1 192 264 IPR000504 GO:0003723
Sebi180g00085 547 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 295 365 IPR000504 GO:0003723
Sebi180g00085 547 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 260 IPR000504 GO:0003723
Sebi180g00085 547 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 486 539 IPR000504 GO:0003723
Sebi180g00085 547 MobiDBLite consensus disorder prediction 10 190 - -
Sebi180g00085 547 FunFam Splicing factor CC1-like 111 276 - -
Sebi180g00085 547 SUPERFAMILY RNA-binding domain, RBD 184 274 IPR035979 GO:0003676
Sebi180g00085 547 MobiDBLite consensus disorder prediction 1 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi180g00085 Sebi-Chr180 912580 917705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi180g00085 265 366 Eukaryotic Initiation Factors Gene Family AT4G34110 35.922 2.93e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi180g00085 K13091 - gmx:100793461 682.559