Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi180g00056 ATGGATGACTACTATTTTGTAAACCCTCATCCTCACCCCAATTATGCTCACTCTGCTGCTATGACTCTACCCTCCTCTGAGTTCATACTATCCGATTTTCTCATGCTCGATGATTGTGCTGATCATCATCAAGATTCTCAATCACAAAGTACTGAATCATCGGAGAAGGTATCCTTCAGCGATGCTAGTCACGGATTCAATGGAGCAACCTCTAAGAACAATAACATGCAAGTAAAATGCAAAAATGGGATTAGGAAAAATAAGGAAGAGGTGAGGCAGAGGATAGCGTTTAGAACCAGATCAGAGCTTGAGATTATGGATGATGGATACAAATGGAGGAAGTATGGAAAGAAGTCCGTGAAGAACAGTCCGAATCTAAGGAACTACTATAAATGTTCAAGTGGAGGATGCAATGTGAAGAAAAGGGTGGAAAGGGATAGAGATGACTCGAGCTATGTGATAACGACTTACGAAGGCGTGCACAATCATGAGAGTCCATTTACTACCTACTCCAGCCAAATCTCCTTCGTACATCCTCATTTTGATGCTTCTTGA 555 0.4162 MDDYYFVNPHPHPNYAHSAAMTLPSSEFILSDFLMLDDCADHHQDSQSQSTESSEKVSFSDASHGFNGATSKNNNMQVKCKNGIRKNKEEVRQRIAFRTRSELEIMDDGYKWRKYGKKSVKNSPNLRNYYKCSSGGCNVKKRVERDRDDSSYVITTYEGVHNHESPFTTYSSQISFVHPHFDAS 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi180g00056 184 Pfam WRKY DNA -binding domain 107 164 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sebi180g00056 184 SUPERFAMILY WRKY DNA-binding domain 98 166 IPR036576 GO:0003700|GO:0006355|GO:0043565
Sebi180g00056 184 SMART WRKY_cls 106 165 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sebi180g00056 184 Gene3D WRKY domain 91 167 IPR036576 GO:0003700|GO:0006355|GO:0043565
Sebi180g00056 184 ProSiteProfiles WRKY domain profile. 101 166 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sebi180g00056 184 MobiDBLite consensus disorder prediction 44 75 - -
Sebi180g00056 184 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 26 169 IPR044810 GO:0003700
Sebi180g00056 184 FunFam WRKY transcription factor 57 92 166 - -
Sebi180g00056 184 MobiDBLite consensus disorder prediction 50 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi180g00056 Sebi-Chr180 568700 570678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi180g00056 7 180 WRKY Transcription Factor Family AT5G64810 43.169 5.15e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Sebi180g00056 WRKY 9.1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi180g00056 - - gmx:100500248 258.455