Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi180g00053 ATGCTGAACACTACAATGGAGTTGGCTGCGAAGCTCCATCACACACTCATTCTCGACGCACCCAAACCTTCTCTTCCCTTACTCTCCAATCGCGCCCTTATTATTAACACAAACCGATTCTTCACCCCCAAAACACCCAATTTCGATGCTTCCGCATGTCGTTTATCCTCAGTTGCATACGACGCCGCCGAAACGACGGCAACAGAAAATGAAAACGACGACATCGCTTCTCTGTTCTCCGACACCTCCAACGAACTCAACAGAAAACGCGGGAACAAGCAACCGAATACCGGTGCTTCCGGTGTCTCATCAGGTGTAAAGTTAGAGAACATTAGCAAAAGCTACAAAGGTGTCACCGTTTTGAAAGACGTTAGCTGGGAAGTGAAGAAGGGTGAGAAAGTGGGTTTGGTTGGCGTAAACGGTGCGGGTAAAACGACCCAATTGAGAATAATTGCGGGTCAGGAAGACCCGGATTCAGGGAACGTGATTAAAGCGAAACCGAATATGAAAGTTGCGTTTTTGAGCCAGGAATTTGAGGTGTCACCTAGTAAAACAGTGAGGGAGGAGTTTCTGAGTGCTTTCAAGGAGGAAATGGAGATAGCAGGGAAGTTGGAGAAGGTGCAGAAGGCTCTGGAAGGTTCTGTGAATGATTTTGAGTTAATGGGAAGGCTTTTGGATGAGTTTGATTTGCTTCAGAGAAGGGCTCAGGATGTGAACTTGGATGAGGTGGATGCAAAGGTTGATAAGTTGATGCCAGAGCTTGGGTTTGCTCCTGAGGATTCTGATAGTATTGTGCAATATGTAGTGGACCCGGATTTATTACTGTTGGATGAACCCACAAATCACCTTGACCTTGACACCATTGAGTGGCTTGAAGATTATCTTAACAAGCAGGATGTGCCAATGGTTATCATTTCCCATGACAGAGCTTTTCTTGATCAGCTGTGTACTAAAATTGTGGAAACTGACATGGGTGTATCCAGGACATTTGAGGGAAATTATTCTCAGTATGTGGTTTCAAAGGCAGCATGGGTTGAAGCACAGTATGCTGCATGGGAGAAGCAGCAAAAAGAAATTGAACAGACAAAAGACTTAATTAATAGGCTAGGTGCTGGAGCAAATTCTGGCCGTGCTTCATCTGCTGAAAAGAAGCTCGAGAGACTTCAGGGAGAGGAACTAGTAGAGAAGCCATTTCAACGGAAACAAATGAAAATCAGGTTCCCTGAGCGTGGAAGGAGTGGGAGATCTGTTGTAACAATTACGAACTTAGAATATGCCTTTGAGGATAAGGTACTTTTCAAGAAGGCAAATCTGACCATTGAAAGAGGAGAAAAGATTGCTATTGTTGGGCCAAATGGATGTGGGAAGAGTACTTTACTGAAATTGATAATGGGTTTAGAGAAGCCCACTGGGGGTGAAGTTATGCTTGGGGAGCATAATGTATTACCTAACTATTTTGAGCAAAATCAGGCAGAGGCACTTGATCTGGACAAGACTGTGCTTCAGGCAGTAGAAGAAGCTGCGGAGGATTGGAAGATTGATGATATTAAAGGACTTCTTGGACGCTGTAATTTCAAATCTGACATGCTTGACCGAAAAGTTTCACTGTTGAGTGGTGGTGAGAAGGCACGCTTGGCGTTCTGTAAATTTATGGTAAAACCATCAACTCTACTTGTATTGGATGAACCAACCAATCACTTGGATATTCCTTCTAAAGAAATGCTTGAGGAGGCAATAACAGAGTACCAAGGCACAGTTATCACAGTGTCTCATGATCGATACTTTATAAGGCAGATAGTTAATAGAGTGATAGAAATTAAAGACGGAACTATACAGAATTATGCAGGCGATTACAATTATTATTTGGAGAAAAATCTTGATGCTAGGAATAGAGAGCTTGAGCGAGATGCAGATCTAGAGGAGAAAGCTCCAAAAATCAAAGCCAAATCTAAGATGTCTAAGGCTGAGAAAGAAGCACGGAAGAAACAGAAGATGCAGGCTTTTCAGGCTGCAAAGCAAAAGTCTAAAGGTTTGAAAAATGCAAAGAGATGGAACTGA 2058 0.4315 MLNTTMELAAKLHHTLILDAPKPSLPLLSNRALIINTNRFFTPKTPNFDASACRLSSVAYDAAETTATENENDDIASLFSDTSNELNRKRGNKQPNTGASGVSSGVKLENISKSYKGVTVLKDVSWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEDPDSGNVIKAKPNMKVAFLSQEFEVSPSKTVREEFLSAFKEEMEIAGKLEKVQKALEGSVNDFELMGRLLDEFDLLQRRAQDVNLDEVDAKVDKLMPELGFAPEDSDSIVQYVVDPDLLLLDEPTNHLDLDTIEWLEDYLNKQDVPMVIISHDRAFLDQLCTKIVETDMGVSRTFEGNYSQYVVSKAAWVEAQYAAWEKQQKEIEQTKDLINRLGAGANSGRASSAEKKLERLQGEELVEKPFQRKQMKIRFPERGRSGRSVVTITNLEYAFEDKVLFKKANLTIERGEKIAIVGPNGCGKSTLLKLIMGLEKPTGGEVMLGEHNVLPNYFEQNQAEALDLDKTVLQAVEEAAEDWKIDDIKGLLGRCNFKSDMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAITEYQGTVITVSHDRYFIRQIVNRVIEIKDGTIQNYAGDYNYYLEKNLDARNRELERDADLEEKAPKIKAKSKMSKAEKEARKKQKMQAFQAAKQKSKGLKNAKRWN 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi180g00053 685 FunFam ABC transporter ATP-binding protein 378 645 - -
Sebi180g00053 685 CDD ABCF_EF-3 418 610 - -
Sebi180g00053 685 MobiDBLite consensus disorder prediction 85 104 - -
Sebi180g00053 685 Pfam ABC transporter 434 565 IPR003439 GO:0005524
Sebi180g00053 685 MobiDBLite consensus disorder prediction 636 665 - -
Sebi180g00053 685 Gene3D - 381 649 IPR027417 -
Sebi180g00053 685 SMART AAA_5 130 330 IPR003593 GO:0016887
Sebi180g00053 685 SMART AAA_5 442 610 IPR003593 GO:0016887
Sebi180g00053 685 MobiDBLite consensus disorder prediction 636 685 - -
Sebi180g00053 685 Pfam ABC transporter 320 407 IPR032781 -
Sebi180g00053 685 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 398 623 IPR027417 -
Sebi180g00053 685 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 418 633 IPR003439 GO:0005524
Sebi180g00053 685 PANTHER ABC TRANSPORTER ATP-BINDING SUBUNIT 105 676 - -
Sebi180g00053 685 Coils Coil 645 674 - -
Sebi180g00053 685 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 107 326 IPR027417 -
Sebi180g00053 685 FunFam Putative ABC transporter ATP-binding component 107 376 - -
Sebi180g00053 685 Coils Coil 623 643 - -
Sebi180g00053 685 CDD ABCF_EF-3 106 321 - -
Sebi180g00053 685 Gene3D - 103 373 IPR027417 -
Sebi180g00053 685 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 106 349 IPR003439 GO:0005524
Sebi180g00053 685 Pfam ABC transporter 121 281 IPR003439 GO:0005524
Sebi180g00053 685 ProSitePatterns ABC transporters family signature. 537 551 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi180g00053 Sebi-Chr180 532776 537451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi180g00053 415 635 Calmodulin-binding Proteins AT2G36910 25.911 3.11e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi180g00053 - - gmx:100796907 1052.74