Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi180g00032 ATGAGGGCTCTCTCTGAGCTCTTCTACCATCTTTATGCCAAGACAATAGTCCTATTCACATACATGCTAATTGAACTTATCCTTATCATTCGGTACCTGAAATCAAATCATACACATGATCCTATTTCCACCACCCAATACCTCAATTTCATTGAAGAGAAGAACCCCACAACTTGCTACACCAAAAGACTGAAGACAGAGCATGTAGACTGCAGGGTATGCTTATCAGAATTTGAGGAAGGGGAAAAAGTTAGGAACTTGAACTGTGAACACACATTTCACAAGGATTGTTTGGACAAGTGGTTCTTGCAAGAGGAGCAATATTGTGCTACTTGCCCACTCTGCAGAAAAAAAGTGTTGCCAGAAGATGTTGTTGCCAACTATCACTTGCTTCAAAATCAGGTAGAAATAGAATATGATGATGGGAGTGATGACCAGTTTCTGGTTTTGTTATCTGCATTAAGGGGTGGTAGCACTTTGCATAGATATCTATTATCATCATTGATAGAAATTAAGTTGTCTCTACTCTCTAGGAGAATAAATTAG 546 0.3883 MRALSELFYHLYAKTIVLFTYMLIELILIIRYLKSNHTHDPISTTQYLNFIEEKNPTTCYTKRLKTEHVDCRVCLSEFEEGEKVRNLNCEHTFHKDCLDKWFLQEEQYCATCPLCRKKVLPEDVVANYHLLQNQVEIEYDDGSDDQFLVLLSALRGGSTLHRYLLSSLIEIKLSLLSRRIN 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi180g00032 181 PANTHER - 1 159 - -
Sebi180g00032 181 SUPERFAMILY RING/U-box 50 122 - -
Sebi180g00032 181 SMART ring_2 71 115 IPR001841 -
Sebi180g00032 181 ProSiteProfiles Zinc finger RING-type profile. 71 116 IPR001841 -
Sebi180g00032 181 Pfam Ring finger domain 70 116 IPR001841 -
Sebi180g00032 181 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 170 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi180g00032 Sebi-Chr180 339031 339576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi180g00032 70 126 C3H Transcription Factor Family AT1G15100 50.877 6.45e-15 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi180g00032 K16282 - gmx:102669811 242.662