Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi180g00008 ATGACGCAGCAGAATGTGGTTGTGTCCGACCCAAAATCAGGGATCAACAGGGCTATTACCGTTGCACAAAAGCCACCCGTGGCTGCTCCTGGAGGCTACATTCCCATTCCAAGGAGGAGGATTTTGAAGAACCTTGAAATCAATGCATGGGTTGACTCCATCAGAGCCTCTTCTCCTACCCATGCCAAATCCACTCCTTCTCTGGCTGAAGAACACAGCTCTTGGATTCTTCACCATCCATCAGCATTAGACATGTTTGAGCAAATTATGGATGCATCCAAGGGGAAACAAATAGTCATGTTCCTTGACTATGATGGTACCTTATCACCAATCGTTGATGACCCTGATCGTGCTTTCATGTCTGATTCGATGAGAAGAACCGTGAGGAAACTTGCAAGGTATTTTCCTACTGCTATAGTTACCGGCAGATGCAGAGACAAGGTATACAATTTTGTTCGCTTGGCTGAGCTGTATTATGCTGGAAGCCATGGTATGGATATTAAGGGGCCAACAAGAGACTCTAAATACAATAAAGACAAAACAGCAGAGGCAGTTCTTTTTCAACCTGCCAGTGAATTTCTTCCCATGATAGATGAGGTGTATGAAAAATTGGTTGAGAAAACAAAATCAACTCCTGGTGCCAGAGTGGAGAACAACAAGTTCTGCCTCTCTGTTCATTTTCGCTGTGTTGATGAAAAGAAATGGAGTGAACTGGCACAGCAAGTGAAATCAGTGTTGAAAGACTACCCGAAGCTTCGTCGTAGCCAAGGAAGAAAGGTACTAGAGATTCGTCCCGATATTAAATGGGACAAAGGGAAGGCCCTGGAATTTCTGTTAGAGTCACTTGGATTTGCCAACTGTAACGATGTCTTTCCTGTATATATTGGTGATGATAAAACCGATGAAGATGCATTCAAGAAATTAAGAGACAGAGGACAAGGTTTGGGGATTCTTGTATCGAAATTTCCAAAGGACACTACTGCATCATACTCTCTACAGGAACCCAATGAGGCAAGTGATGGAGTTTCTTCAACGTTTGGTGGAGTGGAAACAAGTGTCCCTGAGAACACGTTCCCGGGTGTAAATGAAATATGA 1095 0.4365 MTQQNVVVSDPKSGINRAITVAQKPPVAAPGGYIPIPRRRILKNLEINAWVDSIRASSPTHAKSTPSLAEEHSSWILHHPSALDMFEQIMDASKGKQIVMFLDYDGTLSPIVDDPDRAFMSDSMRRTVRKLARYFPTAIVTGRCRDKVYNFVRLAELYYAGSHGMDIKGPTRDSKYNKDKTAEAVLFQPASEFLPMIDEVYEKLVEKTKSTPGARVENNKFCLSVHFRCVDEKKWSELAQQVKSVLKDYPKLRRSQGRKVLEIRPDIKWDKGKALEFLLESLGFANCNDVFPVYIGDDKTDEDAFKKLRDRGQGLGILVSKFPKDTTASYSLQEPNEASDGVSSTFGGVETSVPENTFPGVNEI 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi180g00008 364 FunFam Trehalose 6-phosphate phosphatase 190 266 - -
Sebi180g00008 364 NCBIfam trehalose-phosphatase 96 337 IPR003337 GO:0003824|GO:0005992
Sebi180g00008 364 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 31 340 IPR044651 GO:0004805|GO:0005992
Sebi180g00008 364 Pfam Trehalose-phosphatase 101 335 IPR003337 GO:0003824|GO:0005992
Sebi180g00008 364 CDD HAD_TPP 99 335 - -
Sebi180g00008 364 MobiDBLite consensus disorder prediction 334 364 - -
Sebi180g00008 364 FunFam Trehalose 6-phosphate phosphatase 98 185 - -
Sebi180g00008 364 Gene3D - 100 332 IPR023214 -
Sebi180g00008 364 SUPERFAMILY HAD-like 99 338 IPR036412 -
Sebi180g00008 364 Gene3D - 180 266 - -
Sebi180g00008 364 NCBIfam HAD-IIB family hydrolase 100 311 IPR006379 -
Sebi180g00008 364 FunFam Trehalose 6-phosphate phosphatase 196 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi180g00008 Sebi-Chr180 67657 69930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi180g00008 100 359 Trehalose Biosynthesis Gene Families AT1G60140 26.978 2.51e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi180g00008 K01087 - gmx:100794430 592.808